Microbial community diversity in a 21-year-old temperate alley cropping system

Abstract

Soil physical and chemical properties in the crop alleys and tree rows in alley cropping systems vary greatly due to differences in litter quality and microclimate under trees compared to the alleys. Variations in soil properties influence microbial diversity and function, and thus, in alley cropping systems, bacterial diversity could be different between soils in tree rows and crop alleys. The objective of this study was to compare and contrast soil bacterial diversity in the crop alleys and tree rows in a 21-year-old alley cropping system in Northeast Missouri, USA. Soil samples were taken in three parallel transects to a depth of 10 cm in the tree row and at the middle of the alley in a silver maple (Acer saccharinum) alley cropping system with a companion maize (Zea mays)—soybean (Glycine max) rotation. Soil bulk density, C and N concentrations were similar between the different transects while minor differences were observed between crop alleys and tree rows. No significant difference in bacterial diversity was observed between the tree rows and alley soil based the denaturing gradient gel electrophoresis profiles, band richness (19.6 and 22.8 for tree row and alley, respectively) and Shannon–Weiner diversity (2.958 and 3.099 for tree row and alley, respectively). Identification of bacterial genera revealed dominance of gram +ve as well as gram −ve bacteria in both soil types. Ordination plot revealed no clustering effect based on location (transect) or on the cropping system in the different samples. Bacterial diversity in crop alleys most likely was influenced not only by the maize-soybean rotation, but also by the tree rows contributing both above and belowground litter for the past 21 years.