Methanogenic and methanotrophic communities determine lower CH4 fluxes in a subtropical paddy field under long-term elevated CO2

Abstract

Clarifying the effects of elevated CO2 concentration (e[CO2]) on CH4 emissions from paddy fields and its mechanisms is a crucial part of the research on agricultural systems in response to global climate change. However, the response of CH4 fluxes from rice fields to long-term e[CO2] (e[CO2] duration >10 years) and its microbial mechanism is still lacking. In this study, we used a long-term free-air CO2 enrichment experiment to examine the relationship between CH4 fluxes and the methanogenic and methanotrophic consortia under long- and short-term e[CO2]. We demonstrated that contrary to the effect of short-term e[CO2], long-term e[CO2] decreased CH4 fluxes. This may be associated with the reduction of methanogenic abundance and the increase of methanotrophic abundance under long-term e[CO2]. In addition, long-term e[CO2] also changed the community structure and composition of methanogens and methanotrophs compared with short-term e[CO2]. Partial least squares path modeling analysis showed that long-term e[CO2] also could affect the abundance and composition of methanogens and methanotrophs indirectly by influencing soil physical and chemical properties, thereby ultimately altering CH4 fluxes in paddy soils. These findings suggest that current estimates of short-term e[CO2]-induced CH4 fluxes from paddy fields may be overestimated. Therefore, a comprehensive assessment of climate‑carbon cycle feedbacks may need to consider the microbial regulation of CH4 production and oxidation processes in paddy ecosystems under long-term e[CO2].