Abstract

BackgroundMicrobial community has an essential role in various fields, especially the industrial sector. Microbes produce metabolites in the form of enzymes, which are one of the essential compounds for industrial processes. Unfortunately, there are still numerous microbes that cannot be identified and cultivated because of the limitations of the culture-based method. The metagenomic approach is a solution for researchers to overcome these problems. The main body of the abstractMetagenomics is a strategy used to analyze the genomes of microbial communities in the environment directly. Metagenomics application used to explore novel enzymes is essential because it allows researchers to obtain data on microbial diversity, reaching of 99% and various types of genes encoding an enzyme that has not yet been identified. Basic methods in metagenomics have been developed and are commonly used in various studies. A basic understanding of metagenomics for researchers is needed, especially young researchers to support the success of the research. Short conclusionTherefore, this review was done in order to provide a deep understanding of metagenomics. It also discussed the application and basic methods of metagenomics in the exploration of novel enzymes, especially in the latest research. Several types of enzymes, such as cellulases, proteases, and lipases, which have been explored using metagenomics, were reviewed in this article.

Highlights

  • BackgroundThe microorganism community from nature is the largest community that plays an essential role in the biogeochemical cycle on earth

  • Metagenomics Direct DNA extraction from the environment was started in 1985 by Pace and his team

  • Metagenomics is the study of genomes from microorganism communities in the environment [9, 10]

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Summary

Background

The microorganism community from nature is the largest community that plays an essential role in the biogeochemical cycle on earth. Enzymes are one of the microbial metabolites often used in the industrial processes. DNA is directly extracted from the environment samples without culturing process in the laboratory. In addition to exploring the benefits of gene resources from nature, the existence of metagenomics studies can increase knowledge about the relationships between microorganism communities in the biogeochemical cycle in nature. A thorough understanding of metagenomics and their application in research is expected to have an impact on increasing discoveries about the information of the microbial community and enzymes from nature. This review is designed to discuss the application of metagenomics in the exploration of novel enzymes from nature. The focus of this review is to provide a deep understanding of metagenomics, basic method, and its utilization to enzyme exploration, especially in the latest research

Main text
Assembly
Binning
Sequence analysis
Analysis of protein structure prediction
Phylogenetic analysis
Availability of data and materials Not applicable
Findings
Conclusions
Full Text
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