Abstract

In contrast to bioreactors the metabolites within the microbial cells are converted in an impure atmosphere, yet the productivity seems to be well regulated and not affected by changes in operation variables. These features are attributed to integral metabolic network within the microorganism. With the advent of neo-integrative proteomic approaches the understanding of integration of metabolic and protein-protein interaction networks have began. In this article we review the methods employed to determine the protein-protein interaction and their integration to define metabolite networks. We further present a review of current understanding of network properties, and benefit of studying the networks. The predictions using network structure, for example, in silico experiments help illustrate the importance of studying the network properties. The cells are regarded as complex system but their elements unlike complex systems interact selectively and nonlinearly to produce coherent rather than complex behaviors.

Highlights

  • In contrast to bioreactors the metabolites within the microbial cells are converted in an impure atmosphere, yet the productivity seems to be well regulated and not affected by changes in operation variables

  • These features are attributed to integral metabolic network within the microorganism

  • The microbial proteome and proteomic approaches The analyses of proteome, the ensemble of proteins associated with a given cell, organelle or other sub-cellular component at a given physiological state of cells have been made possible by the sequencing of genome of a number of organisms

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Summary

Introduction

The microbial proteome and proteomic approaches The analyses of proteome, the ensemble of proteins associated with a given cell, organelle or other sub-cellular component at a given physiological state of cells have been made possible by the sequencing of genome of a number of organisms. The technique of synexpression has helped determine a number of interacting proteins for yeast cell-cycle analysis [22] and potential drug targets in rat brain by EST analyses [24]. Metabolic and protein-protein interaction network The cellular processes in a microorganism are seamlessly integrated through a complex network of constituent components and reactions.

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