Abstract

Simple SummaryNeuroblastoma is a pediatric tumor originating from the sympathetic nervous system responsible for 10–15% of all childhood cancer deaths. Half of all neuroblastoma patients present with high-risk disease, of which nearly 50% relapse and die of their disease. In addition, standard therapies cause serious lifelong side effects and increased risk for secondary tumors. Further research is crucial to better understand the molecular basis of neuroblastomas and to identify novel druggable targets. Neuroblastoma tumorigenesis has to this end been modeled in both mice and zebrafish. Here, we present a detailed dissection of the gene expression patterns that underlie tumor formation in the murine TH-MYCN-driven neuroblastoma model. We identified key factors that are putatively important for neuroblastoma tumor initiation versus tumor progression, pinpointed crucial regulators of the observed expression patterns during neuroblastoma development and scrutinized which factors could be innovative and vulnerable nodes for therapeutic intervention.Roughly half of all high-risk neuroblastoma patients present with MYCN amplification. The molecular consequences of MYCN overexpression in this aggressive pediatric tumor have been studied for decades, but thus far, our understanding of the early initiating steps of MYCN-driven tumor formation is still enigmatic. We performed a detailed transcriptome landscaping during murine TH-MYCN-driven neuroblastoma tumor formation at different time points. The neuroblastoma dependency factor MEIS2, together with ASCL1, was identified as a candidate tumor-initiating factor and shown to be a novel core regulatory circuit member in adrenergic neuroblastomas. Of further interest, we found a KEOPS complex member (gm6890), implicated in homologous double-strand break repair and telomere maintenance, to be strongly upregulated during tumor formation, as well as the checkpoint adaptor Claspin (CLSPN) and three chromosome 17q loci CBX2, GJC1 and LIMD2. Finally, cross-species master regulator analysis identified FOXM1, together with additional hubs controlling transcriptome profiles of MYCN-driven neuroblastoma. In conclusion, time-resolved transcriptome analysis of early hyperplastic lesions and full-blown MYCN-driven neuroblastomas yielded novel components implicated in both tumor initiation and maintenance, providing putative novel drug targets for MYCN-driven neuroblastoma.

Highlights

  • Neuroblastoma is a deadly childhood cancer arising from sympatho-adrenergic nervous progenitor cells [1]

  • The samples from the first week after birth of both genotypes (TH-MYCN+/+ and wild type) clustered together, implying that the overall changes in the transcriptomes of this set of samples were comparable with the average variability between biological replicates and used as a reference set for further downstream analyses

  • The samples from the first week after birth of both genotypes (TH-MYCN+/+ and wild type) clustered together, implying that the overall changes in the transcriptomes of this set of samples were comparable with the aver5agofe29 variability between biological replicates and used as a reference set for further downstream analyses

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Summary

Introduction

Neuroblastoma is a deadly childhood cancer arising from sympatho-adrenergic nervous progenitor cells [1]. The driver role of MYCN in neuroblastoma initiation has been supported through murine and zebrafish models overexpressing MYCN in the developing sympathetic neuronal lineage [6,7,8]. We performed gene expression profiling of different stages of tumor development in the TH-MYCN mouse model. The TH-MYCN mouse model represents a highly penetrant transgenic model of neuroblastoma that expresses high levels of human MYCN in the developing sympathetic tissues using a conditional rat tyrosine hydroxylase promoter [9]. To explore the role of MYCN in early tumor development in more depth, we performed a unique combined cross-species and time-course transcriptome analysis of early hyperplastic lesions and full-blown tumors in the TH-MYCN murine model, together with expression data from primary human neuroblastoma and mouse normal sympathetic neuronal development. We identified MEIS2 as an early tumor initiation associated factor, as well as multiple novel MYCN-upregulated dependency genes

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