Abstract

CCA1 codes for mitochondrial, cytosolic, and nuclear ATP(CTP):tRNA nucleotidyltransferase. Studies reported here examine the mechanisms leading to and the consequences of altering the distribution of this important tRNA processing enzyme. We show that the majority of Cca1p-I, translated from the first in-frame ATG, is in mitochondria but surprisingly, there is a small contribution to nuclear and cytosolic tRNA processing by this form as well. The majority of Cca1p-II and Cca1p-III, translated from ATG2 and ATG3, respectively, is in the cytosol but both are also located in the nucleus for processing precursors. Altering the cytosolic/nuclear distribution of Cca1p by fusing the SV40 nuclear localization signal to the 5' end of CCA1 causes a growth defect and results in the accumulation of end-shortened tRNAs in the cytosol. These results suggest an important role for Cca1p in the cytosol of eukaryotes, presumably in the repair of 3' CCA termini. These experiments also demonstrate that individual tRNAs are affected differently by reduced cytosolic nucleotidyltransferase and that cells resuming exponential growth are more severely affected than those continuing exponential growth.

Highlights

  • Transfer RNA biosynthesis is compartmentalized in eukaryotics as both nuclear and mitochondrial DNA generally contain tRNA genes

  • The Majority of Cca1p Is Cytosolic in S. cerevisiae— it is clear from an analysis of tRNA processing and repair that

  • Through indirect immunofluorescence studies described here, we have demonstrated that Cca1p-I is highly enriched in mitochondria and that the majority of Cca1p produced from the second and third ATGs in the open reading frame is cytosolic

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Summary

EXPERIMENTAL PROCEDURES

Strains and Media—Saccharomyces cerevisiae strain W3031B (MATa ade his leu 112 ura can100 trp1-1) was used for immunofluorescence experiments. The 4.4-kb BamHI/SalI fragment containing SV40-NLS-CCA1 was transferred into the BamHI/SalI site of pRS426 and YCp50. This fusion incorporated the amino acids MPKKKRKVEDPKS containing the SV40 NLS [29] at the amino-terminal end of the protein just upstream of amino acid 18 of the CCA1 ORF. Isolation of Small RNAs for Northern Blot Analysis—Overnight cultures were diluted in 50 ml of synthetic complete minus uracil to an OD600 nm of 0.1 and allowed to resume log phase growth. The aqueous layer, containing total cell small RNAs, was transferred to another tube. The following probes complementary to tRNAGCyCsA, 5Ј-TCTGCTGCGCTACCACTGCG-3Ј; tRNAGHTisG, 5Ј-GCCATCTCCTAGAATCGAACCAGG-3Ј; tRNACSeGrA intron, 5Ј-AGCGAACTTTTTTATTCCA-3Ј, and tRNACTrCpA, 5Ј-CTACCATTGAGCCACCGCTTC-3Ј were used

RESULTS
DISCUSSION
Methods

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