Abstract

Cancer cell sensitivity or resistance is almost universally quantified through a direct or surrogate measure of cell number. However, compound responses can occur through many distinct phenotypic outcomes, including changes in cell growth, apoptosis, and non-apoptotic cell death. These outcomes have divergent effects on the tumor microenvironment, immune response, and resistance mechanisms. Here, we show that quantifying cell viability alone is insufficient to distinguish between these compound responses. Using an alternative assay and drug-response analysis amenable to high-throughput measurement, we find that compounds with identical viability outcomes can have very different effects on cell growth and death. Moreover, additive compound pairs with distinct growth/death effects can appear synergistic when only assessed by viability. Overall, these results demonstrate an approach to incorporating measurements of cell death when characterizing a pharmacologic response.

Highlights

  • Quantifying cellular response to therapeutic compounds is essential to understanding their mechanisms of action and assessing therapeutic efficacy[1,2,3]

  • Viability alone is insufficient to distinguish cell growth and death effects To test whether growth and death are confounded in livecell measurements, we first explored the uncertainty in a model using only these measurements (Fig. 1a)

  • Two major phenotypic changes we can observe as cellular responses to drugs are cell growth and death

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Summary

Introduction

Quantifying cellular response to therapeutic compounds is essential to understanding their mechanisms of action and assessing therapeutic efficacy[1,2,3]. In the case of cancer treatments, and often with other diseases, drug activities are evaluated by quantifying the number of live cells after a short period using direct or surrogate measurements[4,5]. Quantities beyond the number and viability of cells provide valuable information about the cellular response. Along with altering cell proliferation, promoting cell death is another important index of drug efficacy[6,7]. Incomplete eradication of drug-susceptible malignant cells allows the survival of drug-tolerant persister cell populations that can develop resistance by multiple routes[8,9,10]. Cell death can occur via a variety of mechanisms, including apoptosis and necroptosis, and selection among

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