Mathematical modelling of dynamics and control in metabolic networks. V. Static bifurcations in single biochemical control loops

Abstract

Here we expand an earlier study of feedback activation in simple linear reaction sequences by searching the parameter space of biologically realistic rate laws for multiple stable steady states. The impetus for this work is to seek the origin of decision making strategies at the metabolic level, with particular emphasis on the switching between the operating conditions needed to meet changing substrate availability and organism requirements. The control loop considered herein is a linear reaction chain in which the end product of the reaction sequence feedback activates the first reaction in the sequence to produce feedback control. It has been found that the criteria for the existence of multiple steady state solutions in such loops involve only the kinetics of the regulatory enzyme controlling the first reaction and that of end product removal. The effects of these kinetics are examined here using two representative models for the regulatory enzyme: the lumped controller, based on Hill-type kinetics, and the symmetry model. The behavior of these two models is qualitatively similar, and both show the characteristics needed for switching between low and high substrate utilization. The removal rate is assumed to be of the Michaelis-Menten type. Judicious scaling of the governing equations permits separation of genetically determined kinetic parameters from concentration dependent ones. This allows us to conclude that, for a fixed set of kinetic parameters, the steady state flux through the loop can be switched between stable steady states by merely varying metabolite or enzyme concentrations. In particular, when the initial substrate exceeds a certain critical level, the loop can be "switched on" (by a discontinuous increase in the flux through the chain), and similarly, when it falls below a critical level, the pathway is shut down. Similar effects can be realized by varying the ratios of enzyme concentrations. It is proposed that by identifying these critical points one can gain significant insight into the objectives of decision making at the metabolic level.