Abstract
The persistence of long-lasting changes in synaptic connectivity that underlie long-term memory require new RNA and protein synthesis. To elucidate the temporal pattern of gene expression that gives rise to long-lasting neuronal plasticity, we analyzed differentially-expressed (DE) RNAs in mouse hippocampal slices following induction of late phase long-term potentiation (L-LTP) specifically within pyramidal excitatory neurons using Translating Ribosome Affinity Purification RNA sequencing (TRAP-seq). We detected time-dependent changes in up- and down-regulated ribosome-associated mRNAs over 2 h following L-LTP induction, with minimal overlap of DE transcripts between time points. TRAP-seq revealed greater numbers of DE transcripts and magnitudes of LTP-induced changes than RNA-seq of all cell types in the hippocampus. Neuron-enriched transcripts had greater changes at the ribosome-loading level than the total RNA level, while RNA-seq identified many non-neuronal DE mRNAs. Our results highlight the importance of considering both time course and cell-type specificity in activity-dependent gene expression during memory formation.
Highlights
Synaptic plasticity, the experience-dependent remodeling of neuronal connectivity, provides a means of storing memories in the brain (Milner et al, 1998)
Previous studies have shown that pharmacological inhibition of transcription and translation within an early time window (∼2 h) has no effect on the persistence of late phase of LTP (L-LTP) (Nguyen et al, 1994; Fonseca et al, 2006; Alberini, 2008, 2009)
The RiboTag mouse expresses floxed HA-tagged ribosomal protein L22 (HAL22) in cells expressing Cre recombinase, which allows for immunoprecipitation of ribosome-associated transcripts in a cell-type specific manner (Sanz et al, 2009)
Summary
The experience-dependent remodeling of neuronal connectivity, provides a means of storing memories in the brain (Milner et al, 1998). Previous studies have shown that pharmacological inhibition of transcription and translation within an early time window (∼2 h) has no effect on the persistence of L-LTP (Nguyen et al, 1994; Fonseca et al, 2006; Alberini, 2008, 2009) These observations are consistent with the idea that a critical early temporal window of new transcription and translation underlies the persistence of stimulus-induced plasticity and memory (Huang et al, 1996). We profiled the temporal pattern of gene expression within excitatory pyramidal neurons following induction of Schaffer collateral (CA3 to CA1) hippocampal LTP
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