Mapping Fractional Vegetation Cover Using Unoccupied Aerial Vehicle Imagery to Guide Conservation of a Rare Riparian Shrub Ecosystem in Southern California

Abstract

The use of unoccupied aerial vehicles (UAVs) for vegetation monitoring is widespread in agriculture and forestry but far less so in ecological restoration where it has tremendous unrealized potential. We tested the ability of multispectral data and a derived vegetation index to classify shrub, herbaceous vegetation, and bare soil cover in a rare alluvial floodplain vegetation community in semiarid Southern California, where shrub cover is manipulated in restoration efforts aimed to provide open habitats required by several threatened and endangered species. Three classifiers and three levels of spatial aggregation were compared for their ability to provide accurate shrub cover estimates at a scale commensurate with the needs of conservation managers. We used object-based image analysis (OBIA) and compared maximum likelihood (ML), support vector machine (SVM), and random forest (RF) classifiers applied to high-spatial resolution (0.14 m) data from a four-band Parrot Sequoia+ multispectral sensor. The SVM and RF classifiers yielded similarly high classification accuracy evaluated using the training data (overall accuracy of 96.4% and 97.6%, respectively), much higher than ML (88%). Aggregating shrub cover data to 25 and 50 m resolutions yielded more accurate and well-calibrated cover estimates (mean absolute error 12% and 11%, respectively, for RF) than 10 m aggregation (MAE 19% for RF). Shrub cover estimated using RF and SVM was able to meet the restoration monitoring needs to distinguish the three phases of shrub habitat characterized by their cover (10–30%, 30–75%, >75%) that differ in habitat quality and restoration prescriptions.