Abstract
BackgroundDomestication generally implies a loss of diversity in crop species relative to their wild ancestors because of genetic drift through bottleneck effects. Compared to native Mediterranean fruit species like olive and grape, the loss of genetic diversity is expected to be more substantial for fruit species introduced into Mediterranean areas such as apricot (Prunus armeniaca L.), which was probably primarily domesticated in China. By comparing genetic diversity among regional apricot gene pools in several Mediterranean areas, we investigated the loss of genetic diversity associated with apricot selection and diffusion into the Mediterranean Basin.ResultsAccording to the geographic origin of apricots and using Bayesian clustering of genotypes, Mediterranean apricot (207 genotypes) was structured into three main gene pools: ‘Irano-Caucasian’, ‘North Mediterranean Basin’ and ‘South Mediterranean Basin’. Among the 25 microsatellite markers used, only one displayed deviations from the frequencies expected under neutrality. Similar genetic diversity parameters were obtained within each of the three main clusters using both all SSR loci and only 24 SSR loci based on the assumption of neutrality. A significant loss of genetic diversity, as assessed by the allelic richness and private allelic richness, was revealed from the ‘Irano-Caucasian’ gene pool, considered as a secondary centre of diversification, to the northern and southwestern Mediterranean Basin. A substantial proportion of shared alleles was specifically detected when comparing gene pools from the ‘North Mediterranean Basin’ and ‘South Mediterranean Basin’ to the secondary centre of diversification.ConclusionsA marked domestication bottleneck was detected with microsatellite markers in the Mediterranean apricot material, depicting a global image of two diffusion routes from the ‘Irano-Caucasian’ gene pool: North Mediterranean and Southwest Mediterranean. This study generated genetic insight that will be useful for management of Mediterranean apricot germplasm as well as genetic selection programs related to adaptive traits.
Highlights
Domestication generally implies a loss of diversity in crop species relative to their wild ancestors because of genetic drift through bottleneck effects
The goal of this study was to clarify the history of the apricot domestication process in the Mediterranean area through an analysis of genotypes originating from Algeria, France, Iran, Italy, Morocco, Spain, Tunisia and Turkey
We addressed the following questions: (i) What is the genetic structure of Mediterranean apricots compared to Irano-Caucasian germplasm? (ii) Is there a loss of genetic diversity from the Near-Eastern secondary centre of diversification to the extreme southwestern Mediterranean area? and (iii) Can distinct apricot diffusion routes be identified throughout the Mediterranean Basin?
Summary
Domestication generally implies a loss of diversity in crop species relative to their wild ancestors because of genetic drift through bottleneck effects. Domestication of plants is a complex evolutionary process in which human selection favours phenotypic transitions making them more useful for humans and better adapted to landscape management. It is a crucial step in the evolution of crop species since humans have an important impact on their origins and changes. The strength of genetic drift during the domestication bottleneck is determined by its duration and the effective population size [13] According to their life-history traits and evolutionary history, diversity loss differs considerably among crop plants. Introgressive hybridization between domesticated forms and their wild relatives has often expanded genetic diversity, counteracting the effects of the initial domestication bottleneck [14]
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