Abstract
AbstractA weighted biological sequence is a string in which a set of characters may appear at each position with respective probabilities of occurrence. We attempt to locate all the tandem repeats in a weighted sequence. By introducing the idea of equivalence classes in weighted sequences, we identify the tandem repeats of every possible length using an iterative partitioning technique, and present the O(n 2) time algorithm.KeywordsWeighted sequencetandem repeatequivalence classequivalence relation
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