Abstract

Phytochromes are photoreceptor proteins that transmit a light signal from a photosensory region to an output domain. Photoconversion involves protein conformational changes whose nature is not fully understood. Here, we use time-resolved X-ray scattering and optical spectroscopy to study the kinetics of structural changes in a full-length cyanobacterial phytochrome and in a truncated form with no output domain. X-ray and spectroscopic signals on the µs/ms timescale are largely independent of the presence of the output domain. On longer time-scales, large differences between the full-length and truncated proteins indicate the timeframe during which the structural transition is transmitted from the photosensory region to the output domain and represent a large quaternary motion. The suggested independence of the photosensory-region dynamics on the µs/ms timescale defines a time window in which the photoreaction can be characterized (e.g. for optogenetic design) independently of the nature of the engineered output domain.

Highlights

  • Phytochromes are photoreceptor proteins that transmit a light signal from a photosensory region to an output domain

  • The results indicate that the kinetics of structural changes in the full-length cyanobacterial phytochrome extends to the seconds timescale with at least two identifiable intermediates and is more complex than that recently reported for a similar phytochrome from Deinococcus radiodurans, where the global structural change occurs in a single concerted motion within a few milliseconds[8]

  • The kinetics of the intensity and the position of the two main features observed in the WAXS region of the timeresolved difference patterns, namely the two negative peaks around 0.62 and 0.3 Å−1, are almost identical in data from the photosensory region and the full-length protein (Fig. 5)

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Summary

Introduction

Phytochromes are photoreceptor proteins that transmit a light signal from a photosensory region to an output domain. Photoisomerization of the chromophore is followed by slower steps on the microto millisecond timescale, which have been proposed to involve global changes in protein structure, to form an active signaling conformation of the C-terminal region in the final Pfr state[7,8].

Results
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