Abstract

Complexity and heterogeneity are intrinsic to neurobiological systems, manifest in every process, at every scale, and are inextricably linked to the systems’ emergent collective behaviours and function. However, the majority of studies addressing the dynamics and computational properties of biologically inspired cortical microcircuits tend to assume (often for the sake of analytical tractability) a great degree of homogeneity in both neuronal and synaptic/connectivity parameters. While simplification and reductionism are necessary to understand the brain’s functional principles, disregarding the existence of the multiple heterogeneities in the cortical composition, which may be at the core of its computational proficiency, will inevitably fail to account for important phenomena and limit the scope and generalizability of cortical models. We address these issues by studying the individual and composite functional roles of heterogeneities in neuronal, synaptic and structural properties in a biophysically plausible layer 2/3 microcircuit model, built and constrained by multiple sources of empirical data. This approach was made possible by the emergence of large-scale, well curated databases, as well as the substantial improvements in experimental methodologies achieved over the last few years. Our results show that variability in single neuron parameters is the dominant source of functional specialization, leading to highly proficient microcircuits with much higher computational power than their homogeneous counterparts. We further show that fully heterogeneous circuits, which are closest to the biophysical reality, owe their response properties to the differential contribution of different sources of heterogeneity.

Highlights

  • Through the Open Science Framework, an open-access, curated and registered repository is available at [1]

  • The code package provided as a supplement (S1 File, available in the OSF repository) implements project-specific functionality to NMSAT [3], which is a tailor-made python package that provides a generic set of tools to build, simulate and analyse neuronal microcircuit models with any degree of complexity, as exemplified in this study

  • It provides a high-level wrapper for PyNEST

Read more

Summary

OSF Repository

Through the Open Science Framework (osf.io), an open-access, curated and registered repository is available at [1]. The project contains all the relevant information necessary to replicate and scrutinize the present work, divided into the following components:. ∙ Data - linked to the Sciebo campus cloud [2], where the data is hosted. Due to the large size of the data (totalling ≈ 550GB), we do not provide a complete data package as a supplement to the manuscript. If there are any difficulties accessing the data through this OSF component, please contact the authors. ∙ Software - all dedicated and modified software that is necessary to run and replicate the experiments (see below):. – NEST 2.10.0 modified – NMSAT v0.1 – Project-specific Code ( provided in S1 Files). ∙ Bibliography - linked to a database containing all the references used in this manuscript

Software and source code
Parameters file
Analysis script
Full Text
Published version (Free)

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call