Abstract

Modeling the brain as a functional network can reveal the relationship between distributed neurophysiological processes and functional interactions between brain structures. Existing literature on functional brain networks focuses mainly on a battery of network properties in “resting state” employing, for example, modularity, clustering, or path length among regions. In contrast, we seek to uncover functionally connected subnetworks that predict or correlate with cohort differences and are conserved within the subjects within a cohort. We focus on differences in both the rate of learning as well as overall performance in a sensorimotor task across subjects and develop a principled approach for the discovery of discriminative subgraphs of functional connectivity based on imaging acquired during practice. We discover two statistically significant subgraph regions: one involving multiple regions in the visual cortex and another involving the parietal operculum and planum temporale. High functional coherence in the former characterizes sessions in which subjects take longer to perform the task, while high coherence in the latter is associated with high learning rate (performance improvement across trials). Our proposed methodology is general, in that it can be applied to other cognitive tasks, to study learning or to differentiate between healthy patients and patients with neurological disorders, by revealing the salient interactions among brain regions associated with the observed global state. The discovery of such significant discriminative subgraphs promises a better data-driven understanding of the dynamic brain processes associated with high-level cognitive functions.

Highlights

  • Network-based modeling and characterization of brain architectures has provided both a framework for integrating imaging data as well as for understanding the function and dynamics of the brain

  • We discover 21 subgraph biomarkers that are both conserved in the sets of candidates produced by Sub-Network Learning (SNL) and whose individual accuracy is significant (q-value 0.015)

  • These candidate subgraphs are selected based on their consistent detection in 9-fold cross validation performed 5 times where the optimal parameters are chosen based on the training accuracy and tested on the left-out fold according to [44]

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Summary

Introduction

Network-based modeling and characterization of brain architectures has provided both a framework for integrating imaging data as well as for understanding the function and dynamics of the brain. Brain networks are commonly studied using techniques drawn from graph theory and machine learning [5]. These techniques provide fundamental and generalizable mathematical representations of complex neuroimaging data: nodes represent brain regions and edges represent structural or functional connectivity. This simplified graphical representation enables the principled examination of patterns of brain connectivity across cognitive and disease states [6]. Global network analysis of both functional and structural connectivity has demonstrated that brain networks have characteristic topological properties, including dense modular structures and efficient long-distance paths [8, 9]

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