Abstract

The KH-type splicing regulatory protein (KSRP) promotes the decay of AU-rich element (ARE)-containing mRNAs. Although KSRP is expressed in the nervous system, very little is known about its role in neurons. In this study, we examined whether KSRP regulates the stability of the ARE-containing GAP-43 mRNA. We found that KSRP destabilizes this mRNA by binding to its ARE, a process that requires the presence of its fourth KH domain (KH4). Furthermore, KSRP competed with the stabilizing factor HuD for binding to these sequences. We also examined the functional consequences of KSRP overexpression and knockdown on the differentiation of primary hippocampal neurons in culture. Overexpression of full length KSRP or KSRP without its nuclear localization signal hindered axonal outgrowth in these cultures, while overexpression of a mutant protein without the KH4 domain that has less affinity for binding to GAP-43′s ARE had no effect. In contrast, depletion of KSRP led to a rise in GAP-43 mRNA levels and a dramatic increase in axonal length, both in KSRP shRNA transfected cells and neurons cultured from Ksrp+/− and Ksrp −/−embryos. Finally we found that overexpression of GAP-43 rescued the axonal outgrowth deficits seen with KSRP overexpression, but only when cells were transfected with GAP-43 constructs containing 3′ UTR sequences targeting the transport of this mRNA to axons. Together, our results suggest that KSRP is an important regulator of mRNA stability and axonal length that works in direct opposition to HuD to regulate the levels of GAP-43 and other ARE-containing neuronal mRNAs.

Highlights

  • Post-transcriptional mechanisms play a critical role in the dynamic control of gene expression in a number of cellular processes, from cell growth to differentiation

  • The non-AU-rich element (ARE) containing RNA derived from the C region of GAP-43 39 untranslated region (UTR) was selected as control RNA since we have previously shown that mRNAs containing this 39 UTR region are very stable [31]

  • KH-type splicing regulatory protein (KSRP) Binds to GAP-43 mRNA in vitro Given that KSRP is known to bind ARE sequences, initial studies used two different RNA-protein binding assays to determine if this RNAbinding proteins (RBPs) binds to GAP-43 mRNA

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Summary

Introduction

Post-transcriptional mechanisms play a critical role in the dynamic control of gene expression in a number of cellular processes, from cell growth to differentiation. These mechanisms are important in neurons where mRNAs are localized to dendrites and growing axons, and can be regulated independently from transcription [1,2,3,4]. There are multiple stages in the life of an mRNA after transcription, from alternative splicing and stabilization/destabilization to transport and translation. The control of mRNA stability is one of the least understood processes in neurons (for a review see [5]). The best known cisacting destabilizing motif is the AU-rich element (ARE) present in the 39 untranslated region (UTR) of some short-lived mRNAs such as those for cytokines [6]

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