Abstract

This paper describes neural models developed for the Social Media Mining for Health (SMM4H) 2021 Shared Task. We participated in two tasks on classification of tweets that mention an adverse drug effect (ADE) (Tasks 1a & 2) and two tasks on extraction of ADE concepts (Tasks 1b & 1c). For classification, we investigate the impact of joint use of BERTbased language models and drug embeddings obtained by chemical structure BERT-based encoder. The BERT-based multimodal models ranked first and second on classification of Russian (Task 2) and English tweets (Task 1a) with the F1 scores of 57% and 61%, respectively. For Task 1b and 1c, we utilized the previous year’s best solution based on the EnDR-BERT model with additional corpora. Our model achieved the best results in Task 1c, obtaining an F1 of 29%.

Highlights

  • Introduction a tweet inEnglish (Task 1a) or Russian (Task 2)mentions an adverse drug effect

  • We focus on discovering adverse drug effects (ADE) concepts in Twitter messages as part of the Social Media Mining for Health (SMM4H) 2021 Shared Task (Magge et al, 2021)

  • For the 1b task, named entity recognition aims to detect the mentions of ADEs

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Summary

Introduction

Introduction a tweet inEnglish (Task 1a) or Russian (Task 2)mentions an adverse drug effect. Text classification, named entity recognition, and medical concept normalization in free-form texts 2.1 Data are crucial steps in every text-mining pipeline. We focus on discovering adverse drug effects (ADE) concepts in Twitter messages as part of the Social Media Mining for Health (SMM4H) 2021 Shared Task (Magge et al, 2021). Task 1 consists of three subtasks, namely 1a, 1b, and 1c each of which corresponds to classification, extraction, and normalization of ADEs. For Task 2, train, dev, and test sets include Russian tweets annotated with a binary label indicating the presence or absence of ADEs. For the 1b task, named entity recognition aims to detect the mentions of ADEs. Task 1c is designed as an end-to-end problem, intended to perform full evaluation of a system operating in real conditions: given a set of raw tweets, the

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