Abstract

Microtubule network remodeling is an essential process for cell development, maintenance, cell division, and motility. Microtubule‐severing enzymes are key players in the remodeling of the microtubule network; however, there are still open questions about their fundamental biochemical and biophysical mechanisms. Here, we explored the ability of the microtubule‐severing enzyme katanin to depolymerize stabilized microtubules. Interestingly, we found that the tubulin C‐terminal tail (CTT), which is required for severing, is not required for katanin‐catalyzed depolymerization. We also found that the depolymerization of microtubules lacking the CTT does not require ATP or katanin's ATPase activity, although the ATP turnover enhanced depolymerization. We also observed that the depolymerization rate depended on the katanin concentration and was best described by a hyperbolic function. Finally, we demonstrate that katanin can bind to filaments that lack the CTT, contrary to previous reports. The results of our work indicate that microtubule depolymerization likely involves a mechanism in which binding, but not enzymatic activity, is required for tubulin dimer removal from the filament ends.

Highlights

  • Microtubule severing enzymes are essential regulators of the microtubule cytoskeleton impacting the intracellular organization during important processes including axon outgrowth, mitosis, cell migration, and plant cell wall organization and deposition

  • We found that katanin had a higher affinity for the carboxy-terminal tail (CTT) than for tubulin within the microtubule lattice, because relatively low concentrations of CTT peptides effectively compete with the microtubule for katanin binding (Bailey et al, 2015)

  • Our data suggest that depolymerization is not equivalent to the severing of small regions of microtubule from the end, as previously suggested (Zhang et al, 2011). This conclusion is supported by several novel results we present here (a) microtubules lacking the CTT cannot be severed but still lose polymer by a process of katanin-catalyzed depolymerization (Figures 1 and 2), (b) depolymerization does not require ATP hydrolysis, and depolymerization rates are enhanced in the presence of ATP (Figure 3), (c) the depolymerization rate correlates to katanin concentration (Figure 4), and (d) katanin is directly observed to bind to microtubules during depolymerization (Figures 5 and 6)

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Summary

| INTRODUCTION

Microtubule severing enzymes are essential regulators of the microtubule cytoskeleton impacting the intracellular organization during important processes including axon outgrowth, mitosis, cell migration, and plant cell wall organization and deposition. Several groups, including our own, have noted that katanin has the ability to depolymerize microtubules in addition to severing them (Díaz-Valencia et al, 2011; McNally & Vale, 1993; Zhang et al, 2011) This activity is important when regulating microtubule length, at the cortex in interphase cells and kinetochore fibers in mitosis (Jiang, Bailey, Burke, Ross, & Dima, 2017b; Jiang, Rezabkova, et al, 2017a; McNally, Audhya, Oegema, & McNally, 2006; Zhang et al, 2011; Zhang, Rogers, Buster, & Sharp, 2007). Our results support a mechanism where the katanin can bind to microtubule ends and act like a wedge to remove dimers

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| EXPERIMENTAL PROCEDURES
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CONFLICTS OF INTEREST
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