Jute CDPK genes and their role in stress tolerance and fiber development: A genome-wide bioinformatic investigation of Chorchorus capsularis and C. olitorius

Abstract

Calcium-dependent protein kinases (CDPKs) are plant-specific calcium sensors, which regulate plant growth and development and induce protective responses to environmental stresses. To date, no information on jute CDPKs is available and their uses in the genetic improvement program is underutilized. In this study, we exploited recently available genome sequence information of two jute species: Corchorus olitorius and C. capsularis to identify, characterise, and functional analysis. Using bioinformatics tools, 16 and 18 CDPK genes with serine/threonine protein kinase along with EF-hand calcium-binding domain were identified from the genomes of C. olitorius and C. capsularis, respectively. Different chromosomes harboured different CDPK genes. Four distinct clades of CDPK genes were identified by phylogenetic analysis. Protein of each clade showed higher conservation in length, structure, and presence of motif. The most prominent transcriptional responses were detected in saline and drought conditions where more than half of the CDPKs were upregulated, suggesting their important roles in abiotic stress responses of jute. Specifically, CoCDPK6, 11, 12, and their corresponding homologs CcCDPK18, 10, 8 were highly expressed in saline and drought conditions. On the other hand, CoCDPK6, 7, 11, 12, and their homologs CcCDPK18, 17, 10, 8 were highly expressed in fiber cell indicating their involvement in fiber cell development. Our results provide an important foundation for further functional dissection of CDPKs of C. olitorius and C. capsularis for salinity and drought stress adaptation and fiber quality improvement.