Isolation and characterization of microsatellite DNA loci from Sillago sihama

Abstract

The silver sillago, Sillago sihama Forsskal is naturally distributed in Indo–West Pacific: Red Sea and Knysna, South Africa to Japan and south to Australia (Wantiez 1993), and is common along beaches, sandbars, mangrove creeks and estuaries. Adults bury themselves in the sand when disturbed (McKay 1992), and feed mainly on polychaete worms, small prawns (Penaeus), shrimps and amphipods (Allen et al. 2002). This fish is found in all Chinese waters including East China Sea, Yellow Sea, Bohai Sea, South China Sea, and the Northern Bay. In China, it is a common marine food fish species, and the supply of this fish relies on capture from the wild. So far, studies of this species have focussed on ecology (Lee et al. 1981; Lu et al. 2008), morphology of early development (Wan 1996), discrimination of the genus Sillago with sagittal otolith shape (Pan and Gao 2010), and phylogenetic relationships of the genus Sillago (Xue et al. 2010; Gao et al. 2011). In the present study, we developed 66 microsatellite loci isolated from a dinucleotide-enriched genomic library of S. sihama using the fast isolation by AFLP of sequences containing repeats (FIASCO) protocol of Zane et al. (2002). These markers should provide a tool for assessing genetic diversity and population structure of wild stocks.