Abstract
Sophisticated software tools to compute various structural characteristics of the proteins are extremely important in interpreting various molecular phenomena. In this work, software IPFP (Integrated Package for protein Feature Prediction) has been developed, which is a combination of a set of packages and executes according to the user's selection. The service available for automatic downloading of PDB files from the web and also predicts its amino acid sequence. Till today, there is no software tool that predicts the core amino acids from the given PDB. From the supplied PDB, the tool is able to predict the completely buried core amino acids. The amino acid distance calculator calculates the Cartesian distance between the selected residue atom types and other residues based on a user defined distances. Further, it is also facilitated to compute and predict the distance from the ions to various amino acids including water molecules. The package is available free at http://mcbi.mitsbiotech.org.in/software/ipfp.rar and can be suitably used for various aspects of protein modelling and design purpose.
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