Abstract

Abstract. After the rediscovery of the Mendel’s laws, the domesticated European rabbit (Orycolagus cuniculus) has been the objective of pioneering studies on coat colour genetics. However, despite the early role of this species in defining genetic mechanisms determining this phenotypic trait, only recently a few loci have been characterized at the molecular level analysing also in rabbits genes already shown to affect coat colour in mice. We herein investigated the rabbit premelanosome protein (PMEL) gene, also known as melanocyte protein Pmel 17 (PMEL17) or silver (SILV), as mutations in the homologous gene in mice and other species produce phenotypic effects similar to what is observed in the dilute coat colour in rabbit. The rabbit dilute locus is determined by a recessive coat colour mutation that dilutes the black to blue (grey) interacting with the basic colours influenced by the agouti and extension loci. To investigate this candidate gene, we isolated and sequenced cDNAs as well as portions of intronic and exonic regions of the PMEL gene in several rabbits with different coat colours and identified single nucleotide polymorphisms, including several missense mutations. One polymorphism, positioned in intron 7, was genotyped in a family in which there was segregation of the dilute coat colour. The results excluded PMEL as the causative gene for the dilute locus in rabbits, shortening the list of candidate genes that should be analysed to identify the mutation determining this phenotypic trait.

Highlights

  • The rabbit PMEL cDNA sequence obtained from the Rex rabbit included 29 bp of the 5'-untranslated regions (UTR), 1 974 bp of the coding sequence (CDS) and 131 of the 3'-UTR, for a total of 2 135 bp (GenBank/EMBL acc. no.: FR849710)

  • Downstream of the N-terminal region (NTR) is a polycystic kidney disease (PKD) domain followed by a conserved cysteine residue that separates a region rich in acidic residues, prolines, serines and threonines consisting primarily of imperfect direct repeated sequences

  • Aligning the Rex rabbit cDNA sequence with that obtained from Angora and Chinchilla rabbits (GenBank/EMBL acc. no.: FR849711 and FR849709) and the rabbit cDNA sequence XM_002711060 we identified, on the whole, 10 single nucleotide polymorphisms (SNPs), 8 of which are missense polymorphisms (c.557T>G, p.V186G; c.584A>G, p.Q195R; c.603T>C; c.854C>T, p.P285L; c.878C>A, p.P293Q; c.1016A>T, p.Q339L; c.1256C>T, p.T419M; c.1346G>T, p.S449I; c.1501G>A, p.G501R; c.1770T>C), and 2 are synonymous SNPs (c.603T>C; c.1770T>C)

Read more

Summary

Introduction

After the rediscovery of the Mendel's laws, the domesticated European rabbit (Orycolagus cuniculus) has been the objective of pioneering studies on coat colour genetics based mainly on fancy breeds/lines (Castle 1905, Castle 1930, Robinson 1958).Despite the early role of the rabbit in defining genetic mechanisms determining this phenotypic trait, only recently a few loci have been characterized at the molecular level analysing in rabbits (Aigner et al 2000, Fontanesi et al 2006, 2010a, 2010b) genes already shown to affect coat colour in mice (Kwon et al 1987, Bultman et al 1992, Robbins et al 1993). To evaluate the potential role of the rabbit PMEL gene in determining the dilute locus, we isolated and sequenced PMEL cDNAs as well as fragments of intronic and exonic regions and identified single nucleotide polymorphisms (SNPs), one of which was used to evaluate linkage with the dilute mutation in domestic rabbits.

Results
Conclusion
Full Text
Published version (Free)

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call