Abstract

The β(2) subunit of class Ia ribonucleotide reductase (RNR) contains a diferric tyrosyl radical cofactor (Fe(2)(III)-Tyr(•)) that is essential for nucleotide reduction. The β(2) subunit of Saccharomyces cerevisiae is a heterodimer of Rnr2 (β) and Rnr4 (β'). Although only β is capable of iron binding and Tyr(•) formation, cells lacking β' are either dead or exhibit extremely low Tyr(•) levels and RNR activity depending on genetic backgrounds. Here, we present evidence supporting the model that β' is required for iron loading and Tyr(•) formation in β in vivo via a pathway that is likely dependent on the cytosolic monothiol glutaredoxins Grx3/Grx4 and the Fe-S cluster protein Dre2. rnr4 mutants are defective in iron loading into nascent β and are hypersensitive to iron depletion and the Tyr(•)-reducing agent hydroxyurea. Transient induction of β' in a GalRNR4 strain leads to a concomitant increase in iron loading and Tyr(•) levels in β. Tyr(•) can also be rapidly generated using endogenous iron when permeabilized Δrnr4 spheroplasts are supplemented with recombinant β' and is inhibited by adding an iron chelator prior to, but not after, β' supplementation. The growth defects of rnr4 mutants are enhanced by deficiencies in grx3/grx4 and dre2. Moreover, depletion of Dre2 in GalDRE2 cells leads to a decrease in both Tyr(•) levels and ββ' activity. This result, in combination with previous findings that a low level of Grx3/4 impairs RNR function, strongly suggests that Grx3/4 and Dre2 serve in the assembly of the deferric Tyr(•) cofactor in RNR.

Highlights

  • Yeast ribonucleotide reductase (RNR) small subunit is an Rnr2-Rnr4 heterodimer; only Rnr2 contains a cluster

  • We present evidence supporting the model that ␤؅ is required for iron loading and Tyr1⁄7 formation in ␤ in vivo via a pathway that is likely dependent on the cytosolic monothiol glutaredoxins Grx3/Grx4 and the Fe-S cluster protein Dre2. rnr4 mutants are defective in iron loading into nascent ␤ and are hypersensitive to iron depletion and the Tyr1⁄7-reducing agent hydroxyurea

  • The impairment of Tyr1⁄7 formation and ␤␤Ј activity in cells depleted of Dre2, in conjunction with our previous studies showing defective RNR function in cells depleted of Grx3/4 [38], suggests a pathway consisting of Grx3/Grx4, Dre2-Tah18, and ␤Ј that is involved in iron mobilization, delivery, and reduction in Fe2III-Tyr1⁄7 cofactor assembly in ␤

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Summary

Background

Yeast RNR small subunit is an Rnr2-Rnr heterodimer; only Rnr contains a cluster. Results: rnr and dre mutants are defective in Rnr cluster formation and display synthetic growth defects with grx3/4. Whole-cell EPR studies and ␤2 activity assays indicate that ⌬rnr cells have very low Tyr1⁄7 content and Ͻ1% ␤2 activity relative to wild-type (WT) cells, despite a 15-fold increase of ␤ levels in the mutant These results suggest that ␤Ј is essential for Fe2III-Tyr1⁄7 cofactor assembly in ␤ in vivo [19]. We demonstrate that adding purified ␤Ј to permeabilized ⌬rnr spheroplasts results in rapid Tyr1⁄7 generation and reconstitution of RNR activity, suggesting that ␤Ј facilitates pre-existing apo-␤2 to form ␤␤Ј, to acquire endogenous bioavailable iron, and to assemble its Fe2III-Tyr1⁄7 cofactor. The impairment of Tyr1⁄7 formation and ␤␤Ј activity in cells depleted of Dre, in conjunction with our previous studies showing defective RNR function in cells depleted of Grx3/4 [38], suggests a pathway consisting of Grx3/Grx, Dre2-Tah, and ␤Ј that is involved in iron mobilization, delivery, and reduction in Fe2III-Tyr1⁄7 cofactor assembly in ␤

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