Abstract
BackgroundIn plants, a critical balance between differentiation and proliferation of stem cells at the shoot apical meristem zone is essential for proper growth. The spatiotemporal regulation of some crucial genes dictates the formation of a boundary within and around budding organs. The boundary plays a pivotal role in distinguishing one tissue type from another and provides a defined shape to the organs at their developed stage. NAM/CUC subfamily of the NAC transcription factors control the boundary formation during meristematic development.ResultsHere, we have identified the CUP-SHAPED COTYLEDON (CUC) genes in sugarcane and named SsCUC2 (for the orthologous gene of CUC1 and CUC2) and SsCUC3. The phylogenetic reconstruction showed that SsCUCs occupy the CUC2 and CUC3 clade together with monocots, whereas eudicot CUC2 and CUC3 settled separately in the different clade. The structural analysis of CUC genes showed that most of the CUC3 genes were accompanied by an intron gain during eudicot divergence. Besides, the study of SsCUCs expression in the RNA-seq obtained during different stages of ovule development revealed that SsCUCs express in developing young tissues, and the expression of SsCUC2 is regulated by miR164. We also demonstrate that SsCUC2 (a monocot) could complement the cuc2cuc3 mutant phenotype of Arabidopsis (eudicot).ConclusionsThis study further supports that CUC2 has diverged in CUC1 and CUC2 during the evolution of monocots and eudicots from ancestral plants. The functional analysis of CUC expression patterns during sugarcane ovule development and ectopic expression of SsCUC2 in Arabidopsis showed that SsCUC2 has a conserved role in boundary formation. Overall, these findings improve our understanding of the functions of sugarcane CUC genes. Our results reveal the crucial functional role of CUC genes in sugarcane.
Highlights
In plants, a critical balance between differentiation and proliferation of stem cells at the shoot apical meristem zone is essential for proper growth
We found that the expression level of SsCUC2 is regulated by miR164, which could be essential for sugarcane ovule development
Our results indicate that SsCUCs play a central role in sugarcane development, and miR164-SsCUC2 module could be essential for sugarcane ovule development
Summary
A critical balance between differentiation and proliferation of stem cells at the shoot apical meristem zone is essential for proper growth. Mutants of CUCgenes revealed various exclusive and partially overlapping phenotypes in different plant development processes such as SAM establishment, lateral organ separation, leaf serration, and ovule formation [1, 17,18,19]. These mutant phenotypes suggest that CUCs are necessary for normal ovule development and CUCs have higher expression in sporogenous tissue of ovule [20,21,22,23,24,25,26,27,28,29,30,31]. Defects in shoot apical meristem and cotyledon shapes can only be detectable under double and triple mutation of CUCs in Arabidopsis [17]
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