Abstract

De novo synthesis of the sphingolipid sphingomyelin requires non-vesicular transport of ceramide from the endoplasmic reticulum to the Golgi by the multidomain protein ceramide transfer protein (CERT). CERT's N-terminal pleckstrin homology (PH) domain targets it to the Golgi by binding to phosphatidylinositol 4-phosphate (PtdIns(4)P) in the Golgi membrane, whereas its C-terminal StAR-related lipid transfer domain (START) carries out ceramide transfer. Hyperphosphorylation of a serine-rich motif immediately after the PH domain decreases both PtdIns(4)P binding and ceramide transfer by CERT. This down-regulation requires both the PH and START domains, suggesting a possible inhibitory interaction between the two domains. In this study we show that isolated PH and START domains interact with each other. The crystal structure of a PH-START complex revealed that the START domain binds to the PH domain at the same site for PtdIns(4)P-binding, suggesting that the START domain competes with PtdIns(4)P for association with the PH domain. We further report that mutations disrupting the PH-START interaction increase both PtdIns(4)P-binding affinity and ceramide transfer activity of a CERT-serine-rich phosphorylation mimic. We also found that these mutations increase the Golgi localization of CERT inside the cell, consistent with enhanced PtdIns(4)P binding of the mutant. Collectively, our structural, biochemical, and cellular investigations provide important structural insight into the regulation of CERT function and localization.

Highlights

  • De novo synthesis of the sphingolipid sphingomyelin requires non-vesicular transport of ceramide from the endoplasmic reticulum to the Golgi by the multidomain protein ceramide transfer protein (CERT)

  • To determine if these changes to activity were the result of nonspecific effects from the high concentrations of pleckstrin homology (PH) proteins used in this assay, the ceramide transfer activity of steroidogenic acute regulatory protein (StAR)-related lipid transfer domain (START) domain was measured in the presence of excess B1 immunoglobulin-binding domain of streptococcal protein G (GB1), which does not interact with START domain and is not related to the PH domain (28 –30)

  • In this study we showed that the CERT PH domain interacts with the START domain through the PtdIns(4)P-binding site of PH domain (7, 8) (Figs. 1– 4, supplemental Fig. S2)

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Summary

Crystallographic data collection and refinement statistics

Data collectiona Space group Unit cell dimensions a, b, c (Å) ␣, ␤, ␥ (°) Wavelength (Å) Resolution (Å) Completeness (%) Unique reflections Redundancy (fold) ͗I/͗␴I Rmerge (%). We determined the crystal structure of a protein complex formed by these two domains. The structure reveals that the START domain interacts with PH domain at its PtdIns(4)P-binding site. Consistent with the structural finding, disruption of the PH–START interaction in a SR phosphorylation-mimic CERT restores both PtdIns(4)P binding and ceramide transfer activity. With these mutations CERT exhibited increased Golgi localization. Our structural, biochemical, and cellular investigations revealed that the START domain associates with the PH domain at the same site used for PH domain membrane-binding and confers CERT functional regulation

Structure of the CERT PH and START domain complex
CERT PH domain interacts with START domain with micromolar affinity
Discussion
Experimental procedures
Protein expression and purification
Isothermal titration calorimetry
AlphaScreen competition assay
FRET measurement of ceramide transfer activity
Immunofluorescence microscopy of CERT cellular localization
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