Abstract

Cellular senescence is a mechanism by which cells permanently withdraw from the cell cycle in response to stresses including telomere shortening, DNA damage, or oncogenic signaling. Senescent cells contribute to both age-related degeneration and hyperplastic pathologies, including cancer. In culture, normal human epithelial cells enter senescence after a limited number of cell divisions, known as replicative senescence. Here, to investigate how metabolic pathways regulate replicative senescence, we used LC-MS-based metabolomics to analyze senescent primary human mammary epithelial cells (HMECs). We did not observe significant changes in glucose uptake or lactate secretion in senescent HMECs. However, analysis of intracellular metabolite pool sizes indicated that senescent cells exhibit depletion of metabolites from nucleotide synthesis pathways. Furthermore, stable isotope tracing with 13C-labeled glucose or glutamine revealed a dramatic blockage of flux of these two metabolites into nucleotide synthesis pathways in senescent HMECs. To test whether cellular immortalization would reverse these observations, we expressed telomerase in HMECs. In addition to preventing senescence, telomerase expression maintained metabolic flux from glucose into nucleotide synthesis pathways. Finally, we investigated whether inhibition of nucleotide synthesis in proliferating HMECs is sufficient to induce senescence. In proliferating HMECs, both pharmacological and genetic inhibition of ribonucleotide reductase regulatory subunit M2 (RRM2), a rate-limiting enzyme in dNTP synthesis, induced premature senescence with concomitantly decreased metabolic flux from glucose into nucleotide synthesis. Taken together, our results suggest that nucleotide synthesis inhibition plays a causative role in the establishment of replicative senescence in HMECs.

Highlights

  • Cellular senescence is a mechanism by which cells permanently withdraw from the cell cycle in response to stresses including telomere shortening, DNA damage, or oncogenic signaling

  • We observed that a significant fraction of senescent human mammary epithelial cells (HMECs) were multinuclear (Fig. 1F and Fig. S1), which has been observed in senescent human melanocyte systems [28] and can result from aberrant mitotic progression in oncogene-induced senescence [29]

  • Because senescenceassociated heterochromatic foci (SAHF) formation is driven by p16 but not p21, this observation is consistent with our finding that senescent HMECs do not exhibit SAHF [27, 30]

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Summary

Results

To study the metabolic alterations that accompany replicative senescence, we used normal diploid HMECs. Metabolite set enrichment set analysis demonstrated that nucleoside mono-/di-/triphosphates were the most significantly down-regulated metabolic pathway in senescent cells (Fig. S2D) Taken together, these data suggest that replicative senescence in HMECs induces dramatic changes in global metabolism with a strong decrease in nucleotide metabolic pool sizes. Visualization of the [U-13C]glutamine fractional contribution to metabolites revealed significant changes in the contribution of glutamine-derived carbon to pyrimidine synthesis (Fig. S4 (E and F) and Table S5) Taken together, these data suggest that senescent cells strongly downregulate the flux of carbon into pyrimidine synthesis while leaving glycolysis and the TCA cycle unaffected. Luciferase-expressing cells exhibited significantly decreased dNDP and dNTP metabolite pool sizes, closely mirroring observations in untransduced proliferating and senescent HMECs. we used U-13C–labeled glucose to assess the fractional contribution of glucose to the metabolism of HMECs expressing hTERT and luciferase. Luciferase-expressing HMECs exhibited significantly reduced fractional incorporation of [U-13C]glucose into these pyrimidines and purines, similar to observations in untransduced proliferating and senescent HMECs

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Discussion
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