Abstract

The unfolded protein response (UPR) is a collection of cellular feedback mechanisms that seek to maintain protein folding homeostasis in the endoplasmic reticulum (ER). When the ER is 'stressed', through either high protein folding demand or undersupply of chaperones and foldases, stress sensing proteins in the ER membrane initiate the UPR. Recently, experiments have indicated that these signalling molecules detect stress by being both sequestered by free chaperones and activated by free unfolded proteins. However, it remains unclear what advantage this bidirectional sensor control offers stressed cells. Here, we show that combining positive regulation of sensor activity by unfolded proteins with negative regulation by chaperones allows the sensor to make a more informative measurement of ER stress. The increase in the information capacity of the combined sensing mechanism stems from stretching of the active range of the sensor, at the cost of increased uncertainty due to the integration of multiple signals. These results provide a possible rationale for the evolution of the observed stress-sensing mechanism.

Highlights

  • The unfolded protein response (UPR) is a cellular stress response resulting from excessive accumulation of unfolded and misfolded protein in the endoplasmic reticulum (ER)

  • The UPR is activated through a single pathway that depends on the transmembrane protein inositol-requiring enzyme 1 (Ire1) transmitting information about the activity of unfolded proteins within the ER lumen across the ER membrane

  • Two additional branches of the UPR are regulated by the ER-membrane proteins: protein-kinase-RNA-like endoplasmic reticulum kinase (Perk) and activating transcription factor 6 (Atf6)

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Summary

Introduction

The unfolded protein response (UPR) is a cellular stress response resulting from excessive accumulation of unfolded and misfolded protein in the endoplasmic reticulum (ER). The UPR is activated through a single pathway that depends on the transmembrane protein inositol-requiring enzyme 1 (Ire1) transmitting information about the activity of unfolded proteins within the ER lumen across the ER membrane. Oligomerization of Ire molecules activates the RNase domain, leading to the non-conventional spicing of HAC1 (or XBP1 in metazoan cells) mRNA [6]. Spliced HAC1/XBP1 is translated to produce a bZIP transcription factor, which upregulates many genes related to protein homeostasis [7,8]. Two additional branches of the UPR are regulated by the ER-membrane proteins: protein-kinase-RNA-like endoplasmic reticulum kinase (Perk) and activating transcription factor 6 (Atf). We focus on the stress-sensing mechanisms of Ire and Perk

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