Influence of methoxy- and nitro-substitutions in the aromatic ring on proton donation ability in hydrogen bond and on the amino group parameters of free and H-bonded molecules of 2-aminopyrimidine

Abstract

Amino- and imino- forms of pyrimidine are widely presented as part of antibiotics, corrective medications for heart failures and metabolic stimulators. Hydrogen bonding is one of the fundamental interactions between biologically active molecules. This type of interactions provides flexibility, speed and variety of the biochemical processes. Proton donation properties of aminopyrimidines significantly depend on the position, number and kind of the substituent in its aromatic ring. In present work we studied the influence of the methoxy- and nitro-substitutions in the phenyl radical of pyridine and pyrimidine cycles on the proton donation ability of the amino group in hydrogen bonds as well as on its geometrical, force, electro-optical and thermodynamical characteristics in free and H-bonded (1:1 and 1:2, with various proton acceptors) molecules of primary aromatic amines. Acetonitrile, dioxane, tetrahydrofourane, dimethylformamide, dimethylsulfoxide and hexamethylphosphoramide (whose proton accepting properties vary within a wide range) were used as proton acceptors in our research. In the region of the amino group stretching and deformation vibrations the IR spectra of free and H-bonded (1:1) molecules of 2-amino-4,6-dimethoxy- and 2-amino-5-nitropyrimidine were studied in complexes with proton acceptors in CCl 4 within the temperature range 288–328 K. The spectra of 1:2 complexes were studied in undiluted aprotic solvents. The following spectral characteristics of absorption bands in amino group stretching vibrations were determined: M (0) (zero spectral moment, integrated intensity B); M (1) (first spectral moment, band “centre of gravity”); effective half width, related to the second central moment (Δ ν 1/2) eff = 2( M (2)) 1/2, frequencies of the deformation vibrations δ(HNH) of free and H-bonded molecules. It was shown that changes of the absorption band spectral characteristics of the amino group stretching and deformation vibrations in the analyzed temperature interval are actually linear. Linear regression parameters Y = aT + b (where Y = M (0), M (1), 2( M (2)) 1/2) of free and H-bonded (1:1, with proton acceptors) molecules of 2-aminopyrimidines were determined. Vibrational and electro-optic tasks were solved for free and H-bonded molecules. Valence angles γ(HNH), force constants K(NH), electrooptic parameters ∂ μ/∂ q NH and ∂ μ / ∂ q NH ′ were determined. Comparative analysis of the influence of methoxy- and nitro-substitution on the amino group spectral characteristics of aniline, 2-aminopyridine and 2-aminopyrimidine in CCl 4 was performed. It was shown that effect of hetero substitution and external substituents in the aromatic ring on spectral characteristics is not additive. Linear correlations were established between spectral, geometrical, force and electro-optical characteristics of the amino group in free and H-bonded (1:1 and 1:2) molecules of substituted 2-aminopyrimidines. Some of these correlations are universal, while most of them are sensitive to the kind, position and number of the substituents in the aromatic ring. During association of 2-aminopyrimidines with dioxane and tetrahydrofourane (1:1 complexes) the charge transfer through the hydrogen bond reveals quite considerable influence on complex formation. The temperature dependence of monomer–complex (1:1) equilibrium constants was studied and following thermodynamical characteristics were determined (using Vant-Hoff equation): enthalpy −Δ H 1 and entropy Δ S 1. Enthalpy −Δ H 2 of 1:2 complexes was determined using the empirical “Intensity rule”. It was shown that H-bond strength in 1:1 complexes is higher than in 1:2 complexes. This is also confirmed by the independent calculations of force constants K(NH) in complexes of different composition. The qualitative agreement was stated between experimental results and quantum-mechanical calculations (DFT-B3LYP/6-31G(d,p)) of the amino group spectral characteristics, valence angles γ(HNH) and force constants K(NH). The tendency in changes of values mentioned above is correctly reflected by quantum-mechanical calculations, depending on kind, position and number of substituents in pyrimidine cycle, so the results of these calculations can be used in research of free molecules and systems with hydrogen bonds.