Inference and model determination for temperature-driven non-linear ecological models

Abstract

This paper is concerned with a contemporary Bayesian approach to the effect of temperature on developmental rates. We develop statistical methods using recent computational tools to model four commonly used ecological non-linear mathematical curves that describe arthropods’ developmental rates. Such models address the effect of temperature fluctuations on the developmental rate of arthropods. In addition to the widely used Gaussian distributional assumption, we also explore Inverse Gamma-based alternatives, which naturally accommodate adaptive variance fluctuation with temperature. Moreover, to overcome the associated parameter indeterminacy in the case of no development, we suggest the zero-inflated Inverse Gamma model. The ecological models are compared graphically via posterior predictive plots and quantitatively via marginal likelihood estimates and Information criteria. Inference is performed using the Stan software and we investigate the statistical and computational efficiency of its Hamiltonian Monte Carlo and Variational Inference methods. We also explore model uncertainty and employ Bayesian Model Averaging framework for robust estimation of the key ecological parameters.