Abstract

HLA molecules are key restrictive elements to present intracellular antigens at the crossroads of an effective T-cell response against SARS-CoV-2. To determine the impact of the HLA genotype on the severity of SARS-CoV-2 courses, we investigated data from 6,919 infected individuals. HLA-A, -B, and -DRB1 allotypes grouped into HLA supertypes by functional or predicted structural similarities of the peptide-binding grooves did not predict COVID-19 severity. Further, we did not observe a heterozygote advantage or a benefit from HLA diplotypes with more divergent physicochemical peptide-binding properties. Finally, numbers of in silico predicted viral T-cell epitopes did not correlate with the severity of SARS-CoV-2 infections. These findings suggest that the HLA genotype is no major factor determining COVID-19 severity. Moreover, our data suggest that the spike glycoprotein alone may allow for abundant T-cell epitopes to mount robust T-cell responses not limited by the HLA genotype.

Highlights

  • T-cell recognition is central for the adaptive immune response to a new challenge such as SARSCoV-2

  • In a generally healthy working age population of 6,919 individuals who had recovered from SARS-CoV-2 infections we found no associations of specific HLA genotypes with the severity of the acute clinical course

  • After correcting for multiple testing, we did not find significant associations of single allotypes with COVID-19 severity. These results suggest that individual HLA genotypes do not limit the immune response to SARS-CoV-2 infection as presumed by other studies [14,15,16, 36]

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Summary

Introduction

T-cell recognition is central for the adaptive immune response to a new challenge such as SARSCoV-2. Presentation of viral peptides on HLA molecules is an essential step required for adaptive immunity to the virus and critically determines the clinical course [1,2,3,4]. Multiple SARS-CoV-2 derived HLA class I and class II presented peptides have been identified and characterized as potential Tcell epitopes [3, 6, 7]. Certain SARSCoV-2 peptides elicit memory T-cell responses even in unexposed individuals [3]. These data provide a hint to crossreactive T-cell immunity between SARS-CoV-2 and ‘common cold’ coronaviruses, including human coronavirus (HCoV)OC43, HCoV-229E, HCoV-NL63, and HCoV-HKU1 [3, 8, 9]

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