Abstract

To assess the role of oxidative stress on the replication of mitochondrial DNA, we examined the kinetics of incorporation of 8-oxo-7,8-dihydroguanosine (8-oxodG) triphosphate catalyzed by the human mitochondrial DNA polymerase. Using transient state kinetic methods, we quantified the kinetics of incorporation, excision, and extension beyond a base pair containing 8-oxodG. The 8-oxodGTP was incorporated opposite dC in the template with a specificity constant of 0.005 microM(-1) s(-1), a value approximately 10,000-fold lower than that for dGTP. Once incorporated, 96% of the time 8-oxodGMP was extended by continued polymerization rather than being excised by the proofreading exonuclease. The specificity constant for incorporation of 8-oxodGTP opposite a template dA was 0.2 microM(-1) s(-1), a value 13-fold higher than incorporation opposite a template dC. The 8-oxodG:dA mispair was extended rather than excised at least 70% of the time. Examination of the kinetics of polymerization with 8-oxodG in the template strand also revealed relatively low fidelity in that dCTP would be incorporated only 90% of the time. In nearly 10% of events, dATP would be incorporated, and once incorporated dA (opposite 8-oxodG) was extended rather than excised. The greatest fidelity was against a dTTP:8-oxodG mismatch affording a discrimination value of only 1800. These data reveal that 8-oxodGTP is a potent mutagen. Once it is incorporated into DNA, 8-oxodGMP codes for error prone DNA synthesis. These reactions are likely to play important roles in oxidative stress in mitochondria related to aging and as compounded by nucleoside analogs used to treat human immunodeficiency virus infections.

Highlights

  • MATERIALS AND METHODSBioTechnologies (San Diego, CA), and unmodified dNTPs were purchased from Sigma-Aldrich

  • GM044613 and the Welch Foundation Grant F-1604

  • A cycle is created in the mitochondria in which a continued state of oxidative stress leads to further damage to electron transport chain components, causing an energy decline, carcinogenesis, and many age-related diseases [5]

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Summary

MATERIALS AND METHODS

BioTechnologies (San Diego, CA), and unmodified dNTPs were purchased from Sigma-Aldrich. It appears that the accumulation of muta- reaction was performed using 1 ␮M Pol ␥ holoenzyme (E200A), tions in the mtDNA appears to have a deleterious effect on 100 ␮M duplex DNA Replication by means of transient state kinetic methods using Polymerization and Exonuclease Reaction Conditions—For recombinant human Pol ␥ holoenzyme and defined oligonu- reactions too fast to measure by manual mixing and quenching, cleotide primer/template combinations. The DNA duplex was added, and the mixture was incubated for an additional 5 min on ice. Incorporation reactions were initiated by the addition of nucleotide and magnesium in the same reaction buffer at 37 °C and quenched with 0.5 M EDTA. The observed reaction rates (k1 and/or k2) and in one case the amplitudes (A1 and/or A2) were plotted against dNTP concentration, and the data were fit to a hyperbola

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RESULTS
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DISCUSSION
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