Abstract
BackgroundThe adverse environmental conditions impose extreme limitation to growth and plant development, restricting the genetic potential and reflecting on plant yield losses. The progress obtained by classic plant breeding methods aiming at increasing abiotic stress tolerances have not been enough to cope with increasing food demands. New target genes need to be identified to reach this goal, which requires extensive studies of the related biological mechanisms. Comparative analyses in ancestral plant groups can help to elucidate yet unclear biological processes.ResultsIn this study, we surveyed the occurrence patterns of expressed sequence tag-derived microsatellite markers for model plants. A total of 13,133 SSR markers were discovered using the SSRLocator software in non-redundant EST databases made for all eleven species chosen for this study. The dimer motifs are more frequent in lower plant species, such as green algae and mosses, and the trimer motifs are more frequent for the majority of higher plant groups, such as monocots and dicots. With this in silico study we confirm several microsatellite plant survey results made with available bioinformatics tools.ConclusionsThe comparative studies of EST-SSR markers among all plant lineages is well suited for plant evolution studies as well as for future studies of transferability of molecular markers.
Highlights
The adverse environmental conditions impose extreme limitation to growth and plant development, restricting the genetic potential and reflecting on plant yield losses
In agriculture, productivity is affected by environmental conditions such as drought, salinity, high radiation and extreme temperatures faced by plants during their life cycle, that impose severe limitations to the growth and propagation, restricting their genetic potential and, reflecting yield losses of agricultural crops
New gene targets need to be identified in order to reach these goals, requiring extensive studies concerning the biological processes related to abiotic stresses
Summary
The adverse environmental conditions impose extreme limitation to growth and plant development, restricting the genetic potential and reflecting on plant yield losses. New target genes need to be identified to reach this goal, which requires extensive studies of the related biological mechanisms. Productivity is affected by environmental conditions such as drought, salinity, high radiation and extreme temperatures faced by plants during their life cycle, that impose severe limitations to the growth and propagation, restricting their genetic potential and, reflecting yield losses of agricultural crops. New gene targets need to be identified in order to reach these goals, requiring extensive studies concerning the biological processes related to abiotic stresses. In a study of micro- and minisatellite distribution in UTR and CDS regions using the Unigene database for several higher plants groups, higher occurrence of these elements in coding regions were found for all the studied species [11]. There is a tendency for underrepresenting the UTR regions in the annotated sequences [11]
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