In-silico identification and characterization of sucrose transporter genes and their differential expression pattern under salinity stress in Glycine max

Abstract

Plant sucrose transporters, involved in sugar transport, are key in facilitating sugar flux across the plant cell membranes. However, external stress stimuli significantly impact these sucrose transporters (SWEET/MST/SUT) and, ultimately, the distribution of photosynthates. This has importance as sucrose is a prime energy source, a signaling molecule, and an osmolyte playing a key role in growth and development processes. This study aims to identify and comprehensive in silico characterization and involvement of soybean sucrose transporters GlymaSWEET, GlymaMST, and GlymaSUT in plant development and salt stress responses in an important oilseed crop soybean (Glycine max L.). A genome-wide screening of soybean revealed 13 GlymaSWEET, 6 GlymaMST, and 5 GlymaSUT orthologues as confirmed from the eggNOG database. Probable sites of these proteins were found to be the membranes of cells and organelles, as suggested by their sub-cellular localization. The cis-regulatory elements of these transporters’ promoters indicated their involvement in environmental stress responses. MicroRNA interactions with these transporters were also studied, besides 3-D protein structure prediction using in silico approaches. To gain an insight into the functional divergence of GlymaSWEET, GlymaMST, and GlymaSUT transporters, qRT-PCR-based gene expression analysis was done both in control and salt-treated root and leaf tissues of two contrasting Indian soybean varieties MAUS-47 (salt-tolerant) and Gujosoya-2 (salt-sensitive). Differential gene expression was observed with varying degrees amongst the varieties and the treatments. Overall, we can conclude that the identified GlymaSWEET, GlymaMST, and GlymaSUT have the potential to be explored as candidate genes for engineering salinity stress tolerance in soybean and other plants.