In Sffamily Identification of Genes in Bacteriophage DNA

Andrew M Kropinski,Tim J Carver,Mark Borodovsky,Paul Stothard,Aaron Darling,Padmanabhan Mahadevan,Donald Seto,Alexandre Lomsadze,Ana M Cerdeño-Tárraga,David S Wishart,Gary Domselaar

doi:10.1007/978-1-60327-565-1_6

In Sffamily Identification of Genes in Bacteriophage DNA

Andrew M Kropinski, Tim J Carver + Show 9 more

https://doi.org/10.1007/978-1-60327-565-1_6

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Publication Date: Jan 1, 2009

Citations: 28

Affiliation: Public Health Agency of Canada, George Mason University, University of Guelph, Canadian Science Centre for Human and Animal Health, Queen's University, National Institute for Nanotechnology, University of Alberta, Wellcome Sanger Institute, The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology, University of Wisconsin–Madison

#Basic Local Alignment Search Tool #Artemis Comparison Tool + Show 8 more

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Abstract

One of the most satisfying aspects of a genome sequencing project is the identification of the genes contained within it.These are of two types: those which encode tRNAs and those which produce proteins. After a general introduction on the properties of protein-encoding genes and the utility of the Basic Local Alignment Search Tool (BLASTX) to identify genes through homologs, a variety of tools are discussed by their creators. These include for genome annotation: GeneMark, Artemis, and BASys; and, for genome comparisons: Artemis Comparison Tool (ACT), Mauve, CoreGenes, and GeneOrder.

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