Abstract

The PM6 implementation in the GAMESS program is extended to elements requiring d-integrals and interfaced with the conducter-like polarized continuum model of solvation, including gradients. The accuracy of aqueous solvation energies computed using AM1, PM3, PM6, and DFT tight binding (DFTB) and the Solvation Model Density (SMD) continuum solvation model is tested using the Minnesota Solvation Database data set. The errors in SMD solvation energies predicted using Neglect of Diatomic Differential Overlap (NDDO)-based methods are considerably larger than when using density functional theory (DFT) and HF, with root mean square error (RMSE) values of 3.4-5.9 (neutrals) and 6-15 kcal/mol (ions) compared to 2.4 and ∼5 kcal/mol for HF/6-31G(d). For the NDDO-based methods, the errors are especially large for cations and considerably higher than the corresponding conductor-like screening model results, which suggests that the NDDO/SMD results can be improved by re-parameterizing the SMD parameters focusing on ions. We found that the best results are obtained by changing only the radii for hydrogen, carbon, oxygen, nitrogen, and sulfur, and this leads to RMSE values for PM3 (neutrals: 2.8/ions: ∼5 kcal/mol), PM6 (4.7/∼5 kcal/mol), and DFTB (3.9/∼5 kcal/mol) that are more comparable to HF/6-31G(d) (2.4/∼5 kcal/mol). Although the radii are optimized to reproduce aqueous solvation energies, they also lead more accurate predictions for other polar solvents such as dimethyl sulfoxide, acetonitrile, and methanol, while the improvements for non-polar solvents are negligible.

Highlights

  • Accurate yet computationally efficient models of aqueous solvation represents an important challenge to molecular modeling

  • We compute the root mean square error (RMSE), mean signed error (MSE) and mean unsigned error (MUE) in order to properly quantify the accuracy of our results

  • The accuracy of aqueous solvation energies computed using AM1, PM3, PM6, and DFTB and the SMD continuum solvation model was tested using a subset of molecules from the MNSOL data set which showed that the errors in SMD solvation energies predicted using NDDO-based methods was considerably larger than when using DFT and HF, with RMSE values of 5.0 to 8.6 kcal/mol compared to 3.4 kcal/mol for HF/6-31G(d)

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Summary

Introduction

Accurate yet computationally efficient models of aqueous solvation represents an important challenge to molecular modeling. COSMO-predicted solvation free energies have RMSE values for the full set of 5.2, 4.8 and 5.0 kcal/mol for AM1, PM3 and PM6 respectively, which are quite similar to the corresponding SMD values for AM1 and PM3.

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