Abstract

Self-complementing split fluorescent proteins (FPs) have been widely used for protein labeling, visualization of subcellular protein localization, and detection of cell–cell contact. To expand this toolset, we have developed a screening strategy for the direct engineering of self-complementing split FPs. Via this strategy, we have generated a yellow–green split-mNeonGreen21–10/11 that improves the ratio of complemented signal to the background of FP1–10-expressing cells compared to the commonly used split GFP1–10/11; as well as a 10-fold brighter red-colored split-sfCherry21–10/11. Based on split sfCherry2, we have engineered a photoactivatable variant that enables single-molecule localization-based super-resolution microscopy. We have demonstrated dual-color endogenous protein tagging with sfCherry211 and GFP11, revealing that endoplasmic reticulum translocon complex Sec61B has reduced abundance in certain peripheral tubules. These new split FPs not only offer multiple colors for imaging interaction networks of endogenous proteins, but also hold the potential to provide orthogonal handles for biochemical isolation of native protein complexes.

Highlights

  • We report a screening strategy for the direct engineering of self-complementing split fluorescent proteins (FPs). Using this strategy, we have generated a yellow–green-colored mNeonGreen21–10/11 (mNG2) that has an improved ratio of complemented signal to the background of FP1–10-expressing cells as compared to GFP1–10/11, as well as a red-colored sfCherry21–10/11 that is about a

  • Background from untagged cells293T WT SFFV_GFP1–10 PGK_GFP1–10 SFFV_mNG21–10Log% of max % of max % of max c LMNAGFP11 (PGK_GFP1–10)mNG211 (SFFV_mNG21–10) RAB11A 1201234 Log 10 μm d e% of max Relative fluorescence intensity SPTLC1

  • Inspired by assays previously used to optimize a protease reporter[9], we devised a general strategy for the engineering of selfcomplementing split fluorescent proteins (FPs)

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Summary

Introduction

We report a screening strategy for the direct engineering of self-complementing split FPs. Using this strategy, we have generated a yellow–green-colored mNeonGreen21–10/11 (mNG2) that has an improved ratio of complemented signal to the background of FP1–10-expressing cells as compared to GFP1–10/11, as well as a red-colored sfCherry21–10/11 that is about a With 11:1–10 transfected DNA ratio increased from 1:1 to 1:3 and 1:5, the normalized whole cell fluorescence by flow cytometry from mNG211 is approximately 50–60% of that from full length mNG2 (Fig. 2e).

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