Abstract

In the cation diffusion facilitator (CDF) family, the transported substrates are confined to divalent metal ions, such as Zn2+, Fe2+, and Mn2+. However, this study identifies a novel CDF member designated MceT from the moderate halophile Planococcus dechangensis. MceT functions as a Na+(Li+, K+)/H+ antiporter, together with its capability of facilitated Zn2+ diffusion into cells, which have not been reported in any identified CDF transporters as yet. MceT is proposed to represent a novel CDF group, Na-CDF, which shares significantly distant phylogenetic relationship with three known CDF groups including Mn-CDF, Fe/Zn-CDF, and Zn-CDF. Variation of key function-related residues to “Y44-S48-Q150” in two structural motifs explains a significant discrimination in cation selectivity between Na-CDF group and three major known CDF groups. Functional analysis via site-directed mutagenesis confirms that MceT employs Q150, S158, and D184 for the function of MceT as a Na+(Li+, K+)/H+ antiporter, and retains D41, D154, and D184 for its facilitated Zn2+ diffusion into cells. These presented findings imply that MceT has evolved from its native CDF family function to a Na+/H+ antiporter in an evolutionary strategy of the substitution of key conserved residues to “Q150-S158-D184” motif. More importantly, the discovery of MceT contributes to a typical transporter model of CDF family with the unique structural motifs, which will be utilized to explore the cation-selective mechanisms of secondary transporters.

Highlights

  • Cation diffusion facilitator (CDF) family proteins are ubiquitous secondary transmembrane transporters in all three kingdoms of living organisms including bacteria, archaea and eukaryotes, which play an important role in the homeostasis of divalent metal cations (Me2+) including Zn2+, Cd2+, Co2+, Fe2+, Ni2+, Mn2+ and possibly Cu2+ and Pb2+ (Paulsen and Saier, 1997; Haney et al, 2005; Montanini et al, 2007)

  • Of three Zn2+-binding sites (A-C) of YiiP, the major binding site A is located in the center of transmembrane domain (TMD) and consists of four coordinating residues: D45 and D49 (DD) in TMH2 and H153 and D157 (HD) in TMH5, whereas other two binding sites (B and C) are located in the cytoplasmic Loop 2,3 and C-terminal domain (CTD) domain, respectively

  • Each ORF is preceded by a predicted promoter and a Shine-Dalgarno (SD) sequence and ORF3 is followed by one possible terminator (Supplementary Figure 1)

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Summary

Introduction

Cation diffusion facilitator (CDF) family proteins are ubiquitous secondary transmembrane transporters in all three kingdoms of living organisms including bacteria, archaea and eukaryotes, which play an important role in the homeostasis of divalent metal cations (Me2+) including Zn2+, Cd2+, Co2+, Fe2+, Ni2+, Mn2+ and possibly Cu2+ and Pb2+ (Paulsen and Saier, 1997; Haney et al, 2005; Montanini et al, 2007) Most members of this family function as Me2+/H+ antiporters, which utilize the proton motive force for the transport of divalent metal ions from the cytoplasm to the. Mutation of HD to ND in TMH2 of human ZnT1 resulted in the loss of its native Zn2+ transport activity and the conversion into a Mn2+ efflux transporter, as human ZnT10 with ND motif in its TMH2 (Nishito et al, 2016)

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