Abstract

Reliability, accuracy, and timeliness of diagnostic testing for SARS-CoV-2 infection have allowed adequate public health management of the disease, thus notably helping the timely mapping of viral spread within the community. Furthermore, the most vulnerable populations, such as people with intellectual disability and dementia, represent a high-risk group across multiple dimensions, including a higher prevalence of pre-existing conditions, lower health maintenance, and a propensity for rapid community spread. This led to an urgent need for reliable in-house rapid testing to be performed prior to hospital admission. In the present study, we describe a pooling procedure in which oropharyngeal and nasopharyngeal swabs for SARS-CoV-2 detection (performed prior to hospital admission using rapid RT-PCR assay) are pooled together at the time of sample collection. Sample pooling (groups of 2–4 samples per tube) allowed us to significantly reduce response times, consumables, and personnel costs while maintaining the same test sensitivity.

Highlights

  • Credo Diagnostics Biomedical) were confirmed with RT-PCR analysis performed at SARS-CoV-2 regional reference centers

  • SARS-CoV-2 patient pooled with a negative control

  • The pooling test was performed in a patient with febrile symptoms, analyzed individually and together with a SARS-CoV-2 negative patient with the following results: mean SARS-CoV-2 = 19.5 (±0.71) and SARS-like universal RNA = 22 (±1.2)

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Summary

Introduction

Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly transmissible and pathogenic disease caused by a novel RNA virus belonging to the same family as SARS-CoV and Middle East respiratory syndrome coronavirus (MERS-CoV) [1]. SARSCoV-2 was firstly identified as the cause of an epidemic viral pneumonia in January 2020, with its first outbreak in the Chinese city of Wuhan. From Wuhan, the pandemic rapidly spread across the globe, causing more than 142 million infections and over 3 million deaths (April 2021) [2]

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