Abstract
Microorganisms are involved in all elemental cycles and therefore it is important to study their metabolism in the natural environment. A recent technique to investigate this is the hydrogen isotopic composition of microbial fatty acids, i.e., heterotrophic microorganisms produce fatty acids enriched in deuterium (D) while photoautotrophic and chemoautotrophic microorganisms produce fatty acids depleted in D compared to the water in the culture medium (growth water). However, the impact of factors other than metabolism have not been investigated. Here, we evaluate the impact of growth phase compared to metabolism on the hydrogen isotopic composition of fatty acids of different environmentally relevant microorganisms with heterotrophic, photoautotrophic and chemoautotrophic metabolisms. Fatty acids produced by heterotrophs are enriched in D compared to growth water with εlipid/water between 82 and 359‰ when grown on glucose or acetate, respectively. Photoautotrophs (εlipid/water between −149 and −264‰) and chemoautotrophs (εlipid/water between −217 and −275‰) produce fatty acids depleted in D. Fatty acids become, in general, enriched by between 4 and 46‰ with growth phase which is minor compared to the influence of metabolisms. Therefore, the D/H ratio of fatty acids is a promising tool to investigate community metabolisms in nature.
Highlights
Microorganisms are key players in all elemental cycles and have a huge impact on their immediate and the global environment (Conrad, 1996; Morel and Price, 2003; Arrigo, 2005; Falkowski and Godfrey, 2008; Muyzer and Stams, 2008; Hügler and Sievert, 2011; Orcutt et al, 2011)
All fatty acids were depleted in D relative to the growth medium and the hydrogen isotopic fractionation expressed as εlipid/water between the fatty acids and the growth water of the individual fatty acids ranged between −153 and −264 (Table 1)
The hydrogen isotopic composition of fatty acids produced by a range of different microorganisms depends on the general metabolism expressed during growth
Summary
Microorganisms are key players in all elemental cycles and have a huge impact on their immediate and the global environment (Conrad, 1996; Morel and Price, 2003; Arrigo, 2005; Falkowski and Godfrey, 2008; Muyzer and Stams, 2008; Hügler and Sievert, 2011; Orcutt et al, 2011). In order to comprehend their environmental impact, it is important to characterize and understand their metabolic activities. Several approaches help to understand microbial metabolisms present in different environments. One approach is the isolation or enrichment of microorganisms from a specific environment to test its growth on possible substrates and investigate its metabolic pathways. The isolation of specific microorganisms can give a biased view of the composition of microbial communities as it has been estimated that only ∼1% of all microorganisms can be enriched, isolated, and cultivated by standard techniques (Amann et al, 1995). Often microorganisms with new metabolic capacities or that are present in the highest abundance have not been isolated (Overmann, 2006).
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