Abstract

The study of intracellular bacterial pathogens in cell culture hinges on inhibiting extracellular growth of the bacteria in cell culture media. Aminoglycosides, like gentamicin, were originally thought to poorly penetrate eukaryotic cells, and thus, while inhibiting extracellular bacteria, these antibiotics had limited effect on inhibiting the growth of intracellular bacteria. This property led to the development of the antibiotic protection assay to study intracellular pathogens in vitro. More recent studies have demonstrated that aminoglycosides slowly penetrate eukaryotic cells and can even reach intracellular concentrations that inhibit intracellular bacteria. Therefore, important considerations, such as antibiotic concentration, incubation time, and cell type need to be made when designing the antibiotic protection assay to avoid potential false positive/negative observations. Yersinia pestis, which causes the human disease known as the plague, is a facultative intracellular pathogen that can infect and replicate in macrophages. Y. pestis is sensitive to gentamicin and this antibiotic is often employed in the antibiotic protection assay to study the Y. pestis intracellular life cycle. However, a large variety of gentamicin concentrations and incubation periods have been reported in the Y. pestis literature without a clear characterization of the potential influences that variations in the gentamicin protection assay could have on intracellular growth of this pathogen. This raised concerns that variations in the gentamicin protection assay could influence phenotypes and reproducibility of data. To provide a better understanding of the potential consequences that variations in the gentamicin protection assay could have on Y. pestis, we systematically examined the impact of multiple variables of the gentamicin protection assay on Y. pestis intracellular survival in macrophages. We found that prolonged incubation periods with low concentrations of gentamicin, or short incubation periods with higher concentrations of the antibiotic, have a dramatic impact on intracellular growth. Furthermore, the degree of sensitivity of intracellular Y. pestis to gentamicin was also cell type dependent. These data highlight the importance to empirically establish cell type specific gentamicin protection assays to avoid potential artificial data in Y. pestis intracellular studies.

Highlights

  • Many bacterial pathogens have evolved mechanisms to infect and survive within host cells

  • We have previously shown that the bioluminescence generated by the LuxPtolC bioreporter directly correlates with bacterial numbers and can be used to kinetically monitor Y. pestis intracellular survival in gentamicin protection assays (Sun et al, 2012; Connor et al, 2015)

  • The antibiotic protection assay has been a key technique for the study of bacterial intracellular pathogenesis

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Summary

Introduction

Many bacterial pathogens have evolved mechanisms to infect and survive within host cells. In order to study and understand the pathogenesis of intracellular pathogens, cell culture-based in vitro assays have been developed. Bacteria are added directly to cells, allowed to adhere and invade for a certain period of time, and the remaining extracellular bacteria are removed by washing the cells (Kokes and Valdivia, 2015; Zuck et al, 2017). For facultative intracellular bacteria that can replicate in tissue culture medium, additional steps are needed to inhibit the growth of extracellular bacteria not removed by washing. The most common approach to limit extracellular growth is to include an antibiotic to the medium after bacteria have had time to invade cells. Application of the antibiotic protection assay have allowed the study of intracellular virulence mechanisms across multiple facultative intracellular bacteria (Kaneko et al, 2016)

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