Abstract

Machine learning has been widely applied in the fields of biomedicine, computational biology, bioinformatics, image processing, and so on. The performance of machine learning methods mainly relies on feature representation that is the mapping from various types of raw data (i.e., image and genomic data) to a discriminant high-dimensional data space, bridging the raw data with the input of learning/inference algorithms. A good representation is often one that captures the discriminative information from the data and supports effective machine learning. However, over the last few decades, most representation learning approaches are labor-intensive and heavily dependent on the professional knowledge of researchers (dependent on handcrafted feature engineering). To conduct more novel applications in bioinformatics and biomedicine, the weakness of current learning algorithms should be overcome by developing novel feature representation learning algorithms, including supervised representation learning algorithms that are learning features from labeled data, unsupervised feature representation strategies that are learning feature representatives from unlabeled data, and deep feature representation learning algorithms that are learning representative features from data using deep learning architectures.

Highlights

  • This Special Section of IEEE ACCESS on feature representation and learning methods with applications in bioinformatics and biomedicine aims at bringing together researchers to disseminate their new feature representation and learning algorithms in biomedical and bioinformatics applications while expanding the scope and ease of applicability of machine learning and making progress toward artificial intelligence (AI)

  • The performance of machine learning methods mainly relies on feature representation that is the mapping from various types of raw data to a discriminant high-dimensional data space, bridging the raw data with the input of learning/inference algorithms

  • The article ‘‘Identifying essential signature genes and expression rules associated with distinctive development stages of early embryonic cells,’’ by Chen et al, provides a group of effective gene signatures and classification rules for embryo cell subtyping, based on a feature list produced by analyzing the single-cell expression profiles of embryo cells using the Monte Carlo feature selection (MCFS) method

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Summary

Introduction

This Special Section of IEEE ACCESS on feature representation and learning methods with applications in bioinformatics and biomedicine aims at bringing together researchers to disseminate their new feature representation and learning algorithms in biomedical and bioinformatics applications while expanding the scope and ease of applicability of machine learning and making progress toward artificial intelligence (AI). Proposes a novel computational method to identify latent tumor suppressor genes (TSGs), based on a learning scheme that can extract essential properties of validated TSGs. Features that are derived from protein–protein interaction networks via a network embedding method are used for representing the data (validated TSGs together with other genes).

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