Abstract

Ventilation is continuously adjusted by a neural network to maintain blood gases and pH. Acute CO2 and/or pH regulation requires neural feedback from brainstem cells that encode CO2/pH to modulate ventilation, including but not limited to brainstem serotonin (5-HT) neurons. Brainstem 5-HT neurons modulate ventilation and are stimulated by hypercapnic acidosis, the sensitivity of which increases with increasing postnatal age. The proper function of brainstem 5-HT neurons, particularly during post-natal development is critical given that multiple abnormalities in the 5-HT system have been identified in victims of Sudden Infant Death Syndrome. Here, we tested the hypothesis that there are age-dependent increases in expression of pH-sensitive ion channels in brainstem 5-HT neurons, which may underlie their cellular CO2/pH sensitivity. Midline raphe neurons were acutely dissociated from neonatal and mature transgenic SSePet-eGFP rats [which have enhanced green fluorescent protein (eGFP) expression in all 5-HT neurons] and sorted with fluorescence-activated cell sorting (FACS) into 5-HT-enriched and non-5-HT cell pools for subsequent RNA extraction, cDNA library preparation and RNA sequencing. Overlapping differential expression analyses pointed to age-dependent shifts in multiple ion channels, including but not limited to the pH-sensitive potassium ion (K+) channel genes kcnj10 (Kir4.1), kcnj16 (Kir5.1), kcnk1 (TWIK-1), kcnk3 (TASK-1) and kcnk9 (TASK-3). Intracellular contents isolated from single adult eGFP+ 5-HT neurons confirmed gene expression of Kir4.1, Kir5.1 and other K+ channels, but also showed heterogeneity in the expression of multiple genes. 5-HT neuron-enriched cell pools from selected post-natal ages showed increases in Kir4.1, Kir5.1, and TWIK-1, fitting with age-dependent increases in Kir4.1 and Kir5.1 protein expression in raphe tissue samples. Immunofluorescence imaging confirmed Kir5.1 protein was co-localized to brainstem neurons and glia including 5-HT neurons as expected. However, Kir4.1 protein expression was restricted to glia, suggesting that it may not contribute to 5-HT neuron pH sensitivity. Although there are caveats to this approach, the data suggest that pH-sensitive Kir5.1 channels may underlie cellular CO2/pH chemosensitivity in brainstem 5-HT neurons.

Highlights

  • Chronic physiological regulation of arterial pH is controlled by the kidney, but arterial oxygen, carbon dioxide (CO2), and pH levels are acutely regulated by chemoreflex-mediated changes in breathing

  • Total RNA extracted from the FAC-sorted enhanced green fluorescent protein (eGFP)+ and eGFP− cell pools was of high quality and sufficient quantity (Nanodrop 2000), and RT-qPCR experiments validated the specificity of the sort

  • We tested the hypothesis that gene transcripts encoding pH sensitive proteins, including known pH-sensitive ion channels are developmentally regulated in 5-HT neurons by applying fluorescent cell sorting and subsequent RNA sequencing to determine age-related and region-specific differential gene expression profiles

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Summary

Introduction

Chronic physiological regulation of arterial pH is controlled by the kidney, but arterial oxygen, carbon dioxide (CO2), and pH levels are acutely regulated by chemoreflex-mediated changes in breathing. Central (brain) respiratory chemoreceptors are resident CNS cells (neurons/glia) whose pH- or CO2-dependent activity can affect ventilation (Richerson et al, 2005). Some brainstem cells have been identified as CO2/pH-sensitive and involved in the control of breathing, and in some cases the location, neurochemical identity, and molecular mechanism(s) of pH sensitivity have been determined. The activity of Phox2b+ RTN neurons is modulated by raphe-derived neuromodulators (serotonin and substance P), and via ATP released by local pH-sensitive glia (Mulkey et al, 2007a), which appear to rely on heteromeric, inwardly rectifying, pH-sensitive K+ (Kir4.1/Kir5.1) channels for their chemosensitivity (Wenker et al, 2010). Other populations of CO2-sensitive neurons in the Locus Coeruleus (LC; catecholaminergic neurons) and solitary complex are thought to rely on yet to be identified pHsensitive K+ channels (Martino and Putnam, 2007; Li and Putnam, 2013)

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