Abstract

Protein kinases exert physiological functions through phosphorylating their specific substrates; however, the mode of kinase–substrate recognition is not fully understood. Rho-kinase is a Ser/Thr protein kinase that regulates cytoskeletal reorganization through phosphorylating myosin light chain (MLC) and the myosin phosphatase targeting subunit 1 (MYPT1) of MLC phosphatase (MLCP) and is involved in various diseases, due to its aberrant cellular contraction, morphology, and movement. Despite the importance of the prediction and identification of substrates and phosphorylation sites, understanding of the precise regularity in phosphorylation preference of Rho-kinase remains far from satisfactory. Here we analyzed the Rho-kinase–MYPT1 interaction, to understand the mode of Rho-kinase substrate recognition and found that the three short regions of MYPT1 close to phosphorylation sites (referred to as docking motifs (DMs); DM1 (DLQEAEKTIGRS), DM2 (KSQPKSIRERRRPR), and DM3 (RKARSRQAR)) are important for interactions with Rho-kinase. The phosphorylation levels of MYPT1 without DMs were reduced, and the effects were limited to the neighboring phosphorylation sites. We further demonstrated that the combination of pseudosubstrate (PS) and DM of MYPT1 (PS1 + DM3 and PS2 + DM2) serves as a potent inhibitor of Rho-kinase. The present information will be useful in identifying new substrates and developing selective Rho-kinase inhibitors.

Highlights

  • Eukaryotic protein kinases are a large family of highly conserved enzymes mediating the phosphorylation of substrate proteins in Ser/Thr/Tyr residues and they play key roles in the cellular signal transduction pathway

  • We found that phosphorylation sites (Ser696/Thr697/Ser854/Thr855) and three neighboring regions of myosin phosphatase targeting subunit 1 (MYPT1) contribute to the interaction with, and phosphorylation by, the catalytic region of Rhokinase

  • Replacing phosphorylation sites to Ala or deleting docking motif (DM) from the MYPT1 fragment reduced the binding ability, and a lack of all components resulted in a loss of binding to Rho-kinase

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Summary

Introduction

Eukaryotic protein kinases are a large family of highly conserved enzymes mediating the phosphorylation of substrate proteins in Ser/Thr/Tyr residues and they play key roles in the cellular signal transduction pathway. The catalytic domain of kinase forms a complex with the target substrate and ATP. PKA preferably phosphorylates the ‘[R/K][R/K]x[S/T]Φ’ (Φ: hydrophobic residue) sequence and mitogen-activated protein kinase (MAPK) phosphorylates the ‘[S/T]P’ sequence, but the sequences satisfying the ‘consensus’ are not always phosphorylated by these kinases, suggesting that an additional rule is required [3]. Several kinases, including the MAPK family, interact with substrates through both the active site and the docking site within the catalytic domain, which enhances the specificity and efficiency of the phosphorylation of target proteins. At least two types of docking motifs that interact with the docking site have been found, from the many substrates that interact with MAPK family kinases, and Biomolecules 2022, 12, 159.

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