Abstract

hnRNP A1 is a member of the hnRNPs (heterogeneous nuclear ribonucleoproteins) family of proteins that play a central role in regulating genes responsible for cell proliferation, DNA repair, apoptosis, and telomere biogenesis. Previous studies have shown that hnRNPA1 had reduced protein levels and increased cytoplasmic accumulation in senescent human diploid fibroblasts. The consequence of reduced protein expression and altered cellular localization may account for the alterations in gene expression observed during senescence. There is limited information for gene targets of hnRNP A1 as well as its in vivo function. In these studies, we performed RNA co-immunoprecipitation experiments using hnRNP A1 as the target protein to identify potential mRNA species in ribonucleoprotein (RNP) complexes. Using this approach, we identified the human double minute 2 (HDM2) mRNA as a binding target for hnRNP A1 in young and senescent human diploid fibroblasts cells. It was also observed that alterations of hnRNP A1 expression modulate HDM2 mRNA levels in young IMR-90 cells. We also demonstrated that the levels of HDM2 mRNA increased with the downregulation of hnRNP A1 and decrease with the overexpression of hnRNP A1. Although we did not observe a significant decrease in HDM2 protein level, a concomitant increase in p53 protein level was detected with the overexpression of hnRNP A1. Our studies also show that hnRNP A1 directly interacts with HDM2 mRNA at a region corresponding to its 3′ UTR (untranslated region of a gene). The results from this study demonstrate that hnRNP A1 has a novel role in participating in the regulation of HDM2 gene expression.

Highlights

  • Cellular senescence is best described as an inevitable irreversible proliferation arrest the phase of primary human fibroblasts in culture [1, 2]

  • We found that there was a significant increase in human double minute 2 (HDM2) mRNA levels in senescent cells as compared with young cells (Figure 6C)

  • We found that hnRNP A1 is bound to several mRNAs not previously identified

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Summary

Introduction

Cellular senescence is best described as an inevitable irreversible proliferation arrest the phase of primary human fibroblasts in culture [1, 2]. Pre-mRNA splicing is a nuclear process that can be constitutive or alternative [4, 5]. Splicing factors that play a crucial role through concentration changes or alterations of their expression patterns have significant impacts on mRNA alternative splicing [9, 10]. We have previously found that hnRNP A1 is significantly downregulated in cellular senescence [10] and can regulate the levels of the alternatively spliced INK4a locus that generates the mRNA isoforms, p16INK4a and p14ARF both of which are growth suppressors that are important in senescence [10, 11]. We initiated this study to identify novel targets of hnRNP A1 and to further explore the role of hnRNP A1 in the modulation of gene expression during cellular senescence. The experimental approach used in this study was to identify the in vivo RNA targets bound in hnRNP A1 RNP complexes isolated from human fibroblasts. The involvement of hnRNP A1 in the regulation of HDM2 gene expression remains to be elucidated

Results
Identification of p16INK4a mRNA in hnRNPA1 complexes
Expression of HDM2 is modulated by hnRNPA1 expression levels
Discussion
Cell culture and generation of senescent fibroblasts
RNA isolation and RNA-PCR to check for genomic contamination
Immunoblotting and protein analysis
Overexpression of hnRNP A1 by transient transfection
Confirmation of gene expression using real-time PCR
Cloning protocol and sequencing
10. Sequence analysis using BLAST and PESX
Findings
11. Biotin pull-down assay
Full Text
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