Identification of pathogen-specific novel sources of genetic resistance against ascochyta blight and their underlying genetic control

Abstract

Global chickpea production is restricted by ascochyta blight caused by the necrotrophic fungi ascochyta rabiei. Developing locally adapted disease-resistant cultivars is an economically and environmentally sustainable approach to combat this disease. However, the lack of genetic variability in cultivated chickpeas and breeder-friendly markers poses a significant challenge to ascochyta blight-resistant breeding efforts in chickpeas. In this study, we screened the mini-core germplasm of Cicer reticulatum against a local pathotype of ascochyta rabiei. A modified mini-dome screening approach resulted in the identification of five accessions showing a high level of resistance. The mean disease score of resistant accessions ranged between 1.75±0.3 and 2.88±0.4 compared to susceptible accessions, where the mean disease score ranged between 3.59±0.62 and 8.86±0.14. Genome-wide association analysis revealed a strong association on chromosome 5, explaining ~58% of the phenotypic variance. The underlying region contained two candidate genes (Cr_14190.1_v2 and Cr_14189.1_v2), characterization of which showed the presence of a DNA binding domain (cl28899 & cd18793) in Cr_14190.1_v2 and its orthologs in C. arietinum, whereas Cr_14190.1_v2 carried an additional N-terminal domain (cl31759). qPCR expression analysis in resistant and susceptible accessions revealed ~3 and ~110-fold higher transcript abundance for Cr_14189.1 and Cr_14190.1, respectively.