Abstract
BackgroundThe H-NS protein is a global regulator of gene expression in bacteria and can also bind transposition complexes (transpososomes). In Tn5 transposition H-NS promotes transpososome assembly in vitro and disruption of the hns gene causes a modest decrease in Tn5 transposition (three- to five-fold). This is consistent with H-NS acting as a positive regulator of Tn5 transposition. Molecular determinants for H-NS binding to the Tn5 transpososome have not been determined, nor has the strength of the interaction been established. There is also uncertainty as to whether H-NS regulates Tn5 transposition in vivo through an interaction with the transposition machinery as disruption of the hns gene has pleiotropic effects on Escherichia coli, the organism used in this study.ResultsIn the current work we have further examined determinants for H-NS binding to the Tn5 transpososome through both mutational studies on Tn5 termini (or 'transposon ends') and protein-protein cross-linking analysis. We identify mutations in two different segments of the transposon ends that abrogate H-NS binding and characterize the affinity of H-NS for wild type transposon ends in the context of the transpososome. We also show that H-NS forms cross-links with the Tn5 transposase protein specifically in the transpososome, an observation consistent with the two proteins occupying overlapping binding sites in the transposon ends. Finally, we make use of the end mutations to test the idea that H-NS exerts its impact on Tn5 transposition in vivo by binding directly to the transpososome. Consistent with this possibility, we show that two different end mutations reduce the sensitivity of the Tn5 system to H-NS regulation.ConclusionsH-NS typically regulates cellular functions through its potent transcriptional repressor function. Work presented here provides support for an alternative mechanism of H-NS-based regulation, and adds to our understanding of how bacterial transposition can be regulated.
Highlights
The H-NS protein is a global regulator of gene expression in bacteria and can bind transposition complexes
Basepair mutations within two putative H-NS binding sites reduce the affinity of H-NS for the Tn5 transpososome We previously used hydroxyl radical footprinting to characterize the H-NS interaction with a Tn5 transpososome assembled with mosaic end (ME) sequences [9]; the ME is a chimeric end composed of nucleotides from both the outside (OE) and inside ends (IE) of Tn5 and is optimized for use in vitro [19]
Consistent with the idea that H-NS acts directly on the transpososome to promote Tn5 transposition, we found that the transposition frequency of Tn5 elements harboring end mutations that strongly interfered with HNS binding to the transpososome in vitro was largely insensitive to hns status
Summary
The H-NS protein is a global regulator of gene expression in bacteria and can bind transposition complexes (transpososomes). In Tn5 transposition H-NS promotes transpososome assembly in vitro and disruption of the hns gene causes a modest decrease in Tn5 transposition (three- to five-fold). This is consistent with H-NS acting as a positive regulator of Tn5 transposition. While transposons can compromise genome stability through the various types of DNA rearrangements they promote, they can confer a selective advantage to their hosts. This can come about through transposons acquiring genes that encode resistance to antibiotics and other environmental toxins, or through transposon insertion events that alter the expression of key host genes. Examples of such proteins include IHF, HU, H-NS, Fis, topoisomerase I, DNA gyrase and DnaA [2,8]
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