Abstract
MicroRNAs (miRNAs) play an important role in plant resistance to pathogen infections. However, little is known about the role of miRNAs in banana Fusarium wilt, which is the most economically devastating disease in banana production. In the present study, we identified and characterized a total of 18 miR169 family members in banana (Musa acuminata L.) based on small RNA sequencing. The banana miR169 family clustered into two groups based on miRNA evolutionary analysis. Multiple sequence alignment indicated a high degree of sequence conservation in miRNA169 family members across 28 plant species. Computational target prediction algorithms were used to identify 25 targets of miR169 family members in banana. These targets were enriched in various metabolic pathways that include the following molecules: glycine, serine, threonine, pentose, glycerolipids, nucleotide sugars, starch, and sucrose. Through miRNA transcriptomic analysis, we found that ma-miR169a and ma-miR169b displayed high expression levels, whereas the other 16 ma-miR169 members exhibited low expression in the HG and Baxi banana cultivars. Further experiments indicate that there were negative relationships between ma-miR169a, ma-miR169b and their targets basing on their expression levels to Foc4 (Fusarium oxysporum f. sp. cubense tropical race 4) infection in resistant cultivars. But they were low expressed in susceptive cultivars. These results suggested that the expression levels of ma-miR169a and ma-miR169b were consistent with the resistance degree of the banana cultivars to Foc4. The analysis presented here constitutes a starting point to understand ma-miR169-mediated Fusarium wilt resistance at the transcriptional level in banana and predicts possible candidate targets for the genetic improvement of banana resistance to Foc4.
Highlights
MicroRNAs are a class of 18- to 22-nucleotide-long noncoding RNAs that play an important role in gene regulation at the posttranscriptional level in plants ( Slezak-Prochazka et al., 2010; Bartel,2004)
The analysis presented here constitutes a starting point to understand ma37 miR169-mediated Fusarium wilt resistance at the transcriptional level in banana and predicts 38 possible candidate targets for the genetic improvement of banana resistance to Foc4
Many studies have demonstrated the involvement of miRNAs in responses to abiotic stresses such as drought, low temperature, high salinity and nutrient deficiency
Summary
MicroRNAs (miRNAs) are a class of 18- to 22-nucleotide-long noncoding RNAs that play an important role in gene regulation at the posttranscriptional level in plants ( Slezak-Prochazka et al., 2010; Bartel,2004). Through miRNA transcriptomic analysis, we found that ma-miR169a and ma-miR169b displayed high expression levels, whereas the other 16 ma-miR169 members exhibited low expression in the HG and BX banana cultivars. Further experiments indicate that there were negative relationships between ma-miR169a, ma-miR169b and their targets basing on their expression levels to Foc4(Fusarium oxysporum f.
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