Abstract

• 8789 genic-SSR markers were identified in the transcriptome of Stevia rebaudiana . • 3069 CCGS were associated with functional genes. • 1617 CCGS were mapped to 530 proteins in KEGG database. • 185 CCGS associated with defense and stress responses, SGs and flowering genes were identified. • 14 markers (3 polymorphic) were cross-amplified in three different Stevia varieties.

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