Abstract

Interest in bat-related viruses has increased considerably during the last decade, leading to the discovery of a rising number of new viruses in several bat species. Poxviridae are a large, diverse family of DNA viruses that can infect a wide range of vertebrates and invertebrates. To date, only a few documented detections of poxviruses have been described in bat populations on three different continents (America, Africa, and Australia). These viruses are phylogenetically dissimilar and have diverse clinical impacts on their hosts. Herein, we report the isolation, nearly complete genome sequencing, and annotation of a novel poxvirus detected from an insectivorous bat (Hypsugo savii) in Northern Italy. The virus is tentatively named Hypsugopoxvirus (HYPV) after the bat species from which it was isolated. The nearly complete genome size is 166,600 nt and it encodes 161 genes. Genome analyses suggest that HYPV belongs to the Chordopoxvirinae subfamily, with the highest nucleotide identity (85%) to Eptesipoxvirus (EPTV) detected from a microbat Eptesicus fuscus in WA, USA, in 2011. To date, HYPV represents the first poxvirus detected in bats in Europe; thus, its viral ecology and disease associations should be investigated further.

Highlights

  • Poxviruses are dsDNA viruses with large genomes (130 to 360 kb) that belong to the familyPoxviridae

  • We report the isolation, nearly complete genomic sequencing, and annotation of a novel poxvirus detected from an insectivorous bat (Hypsugo savii) in Northern Italy

  • The sick bat was originally found alive on July 17, 2017 in Telgate (Bergamo Province, Northern Italy) by a private citizen who brought it to the center

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Summary

Introduction

Poxviruses are dsDNA viruses with large genomes (130 to 360 kb) that belong to the familyPoxviridae. Poxviruses are dsDNA viruses with large genomes (130 to 360 kb) that belong to the family. The family is divided into the Entomopoxvirinae and the Chordopoxvirinae subfamilies of viruses, which infect insects and vertebrates, respectively. Committee on Taxonomy of Viruses (ICTV) 2017 Release [1], 11 genera have been created to classify Chordopoxviruses (Avipoxvirus, Capripoxvirus, Centapoxvirus, Cervidpoxvirus, Crocodylidpoxvirus, Leporipoxvirus, Molluscipoxvirus, Orthopoxvirus, Parapoxvirus, Suipoxvirus, and Yatapoxvirus), but other viruses remain unclassified and new genera are likely to be recognized in the future. Poxviruses show a diverse host range, with some viruses having wide host tropism (e.g., Orthopoxviruses) and being associated with greater zoonotic risks [2], and others having strict host specificity. Bats have been increasingly recognized as reservoirs of emerging viral infections, which has important ramifications for animal and public health [3]. It has been assumed that bats may have a “special” relationship with

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