Hybrid Convolutional Neural Network (hCNN) for Image Reconstruction in Near-Infrared Optical Tomography.

Abstract

Near-infrared optical tomography (NIROT), a promising imaging modality for early detection of oxygenation in the brain of preterm infants, requires data acquisition at the tissue surface and thus an image reconstruction adaptable to cephalometric variations and surface topologies. Widely used model-based reconstruction methods come with the drawback of huge computational cost. Neural networks move this computational load to an offline training phase, allowing much faster reconstruction. Our aim is a data-driven volumetric image reconstruction that generalises well to different surfaces, increases reconstruction speed, localisation accuracy and image quality. We propose a hybrid convolutional neural network (hCNN) based on the well-known V-net architecture to learn inclusion localisation and absorption coefficients of heterogenous arbitrary shapes via a joint cost function. We achieved an average reconstruction time of 30.45s, a time reduction of 89% and inclusion detection with an average Dice score of 0.61. The CNN is flexible to surface topologies and compares well in quantitative metrics with the traditional model-based (MB) approach and state-of-the-art neuronal networks for NIROT. The proposed hCNN was successfully trained, validated and tested on in-silico data, excels MB methods in localisation accuracy and provides a remarkable increase in reconstruction speed.